Mathematical and computational models in spheroid-based biofabrication
Source abstract
Abstract
Ubiquitous in embryonic development, tissue fusion is of interest to tissue engineers who use tissue spheroids or organoids as building blocks of three-dimensional (3D) multicellular constructs. This review presents mathematical models and computer simulations of the fusion of tissue spheroids. The motivation of this study stems from the need to predict the post-printing evolution of 3D bioprinted constructs. First, we provide a brief overview of differential adhesion, the main morphogenetic mechanism involved in post-printing structure formation. It will be shown that clusters of cohesive cells behave as an incompressible viscous fluid on the time scale of hours. The discussion turns then to mathematical models based on the continuum hydrodynamics of highly viscous liquids and on statistical mechanics. Next, we analyze the validity and practical use of computational models of multicellular self-assembly in live constructs created by tissue spheroid bioprinting. Finally, we discuss the perspectives of the field as machine learning starts to reshape experimental design, and modular robotic workstations tend to alleviate the burden of repetitive tasks in biofabrication. STATEMENT OF SIGNIFICANCE: Bioprinted constructs are living systems, which evolve via morphogenetic mechanisms known from developmental biology. This review presents mathematical and computational tools devised for modeling post-printing structure formation. They help achieving a desirable outcome without expensive optimization experiments. While previous reviews mainly focused on assumptions, technical details, strengths, and limitations of computational models of multicellular self-assembly, this article discusses their validity and practical use in biofabrication. It also presents an overview of mathematical models that proved to be useful in the evaluation of experimental data on tissue spheroid fusion, and in the calibration of computational models. Finally, the perspectives of the field are discussed in the advent of robotic biofabrication platforms and bioprinting process optimization by machine learning.
Source: openalex_inverted_index · Quality: baseline
Research context
OpenAlex topics: 3D Printing in Biomedical Research · Additive Manufacturing and 3D Printing Technologies · Cellular Mechanics and Interactions
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
References (100+)
Show source-provided references
1. Tissue engineering10.1126/science.8493529 ↗
2. Lanza · 2007
3. A decade of progress in tissue engineering10.1038/nprot.2016.123 ↗
4. Engineering organoids10.1038/s41578-021-00279-y ↗
5. Developmentally inspired human ‘organs on chips10.1242/dev.156125 ↗
6. Bioprinted 3D primary liver tissues allow assessment of organ-level response to clinical drug induced toxicity in vitro10.1371/journal.pone.0158674 ↗
7. 3D Bioprinted cancer models: revolutionizing personalized cancer therapy10.1016/j.tranon.2021.101015 ↗
8. 3D bioprinting of tissues and organs10.1038/nbt.2958 ↗
9. The bioprinting roadmap10.1088/1758-5090/ab5158 ↗
10. Chua · 2015
11. Khademhosseini · 2018
12. Ozbolat · 2016
13. Three-dimensional bioprinting of thick vascularized tissues10.1073/pnas.1521342113 ↗
14. Engineering biological structures of prescribed shape using self-assembling multicellular systems10.1073/pnas.0400164101 ↗
15. Tissue engineering by self-assembly and bio-printing of living cells10.1088/1758-5082/2/2/022001 ↗
16. The concept of self-organization in cellular architecture10.1083/jcb.200108110 ↗
17. Organoids: a historical perspective of thinking in three dimensions10.1083/jcb.201610056 ↗
18. Biomanufacturing of organ-specific tissues with high cellular density and embedded vascular channels10.1126/sciadv.aaw2459 ↗
19. Recapitulating macro-scale tissue self-organization through organoid bioprinting10.1038/s41563-020-00803-5 ↗
20. The differential adhesion hypothesis: a direct evaluation10.1016/j.ydbio.2004.11.012 ↗
21. Differential adhesion in morphogenesis: a modern view10.1016/j.gde.2007.05.002 ↗
22. Role of computer simulation to predict the outcome of 3D bioprinting10.2217/3dp-2016-0008 ↗
23. Computer simulations of in vitro morphogenesis10.1016/j.biosystems.2012.06.002 ↗
24. Tissue engineering, 3D-Bioprinting, morphogenesis modelling and simulation of biostructures: relevance, underpinning biological principles and future trends10.1016/j.bprint.2021.e00171 ↗
25. Adhesion in development: an historical overview10.1006/dbio.1996.0312 ↗
26. Reconstruction of tissues by dissociated cells. Some morphogenetic tissue movements and the sorting out of embryonic cells may have a common explanation10.1126/science.141.3579.401 ↗
27. Does differential adhesion govern self-assembly processes in histogenesis? Equilibrium configurations and the emergence of a hierarchy among populations of embryonic cells10.1002/jez.1401730406 ↗
28. Cell adhesion: the molecular basis of tissue architecture and morphogenesis10.1016/S0092-8674(00)81279-9 ↗
29. Functional analysis of the structural basis of homophilic cadherin adhesion10.1016/S0006-3495(03)75129-7 ↗
30. Hydrodynamics of micropipette aspiration10.1016/S0006-3495(99)77183-3 ↗
31. Adhesion functions in cell sorting by mechanically coupling the cortices of adhering cells10.1126/science.1225399 ↗
32. The actin cortex at a glance10.1242/jcs.186254 ↗
33. Liquid properties of embryonic-tissues - measurement of interfacial-tensions10.1103/PhysRevLett.72.2298 ↗
34. Surface tensions of embryonic tissues predict their mutual envelopment behavior10.1242/dev.122.5.1611 ↗
35. The differential interfacial tension hypothesis (DITH): a comprehensive theory for the self-rearrangement of embryonic cells and tissues10.1115/1.1449491 ↗
36. Knowing the boundaries: Extending the Differential Adhesion Hypothesis in embryonic cell sorting10.1126/science.1223953 ↗
37. Tissue cohesion and the mechanics of cell rearrangement10.1242/dev.104315 ↗
38. Coaction of intercellular adhesion and cortical tension specifies tissue surface tension10.1073/pnas.1003743107 ↗
39. A rheological mechanism sufficient to explain the kinetics of cell sorting10.1016/0022-5193(72)90114-2 ↗
40. Aspiration of biological viscoelastic drops10.1103/PhysRevLett.104.218101 ↗
41. Mechanosensitive shivering of model tissues under controlled aspiration10.1073/pnas.1105741108 ↗
42. Developmental biology and tissue engineering10.1002/bdrc.20109 ↗
43. Cellular bioink surface tension: a tunable biophysical parameter for faster maturation of bioprinted tissue10.1016/j.bprint.2017.10.001 ↗
44. Hybrid bioprinting of chondrogenically induced human mesenchymal stem cell spheroids10.3389/fbioe.2020.00484 ↗
45. Advances in hybrid fabrication toward hierarchical tissue constructs10.1002/advs.201902953 ↗
46. Automated 3D bioassembly of micro-tissues for biofabrication of hybrid tissue engineered constructs10.1088/1758-5090/aa9ef1 ↗
47. Spreading dynamics and wetting transition of cellular aggregates10.1073/pnas.1018057108 ↗
48. Compaction dynamics during progenitor cell self-assembly reveal granular mechanics10.1016/j.matt.2020.02.016 ↗
49. Kinetic Monte Carlo and cellular particle dynamics simulations of multicellular systems10.1103/PhysRevE.85.031907 ↗
50. Colloquium: Modeling the dynamics of multicellular systems: application to tissue engineering10.1103/RevModPhys.84.1791 ↗
51. Viscous flow of crystalline bodies under the action of surface tension
52. Modification of Frenkel's model for sintering10.1002/aic.690431213 ↗
53. Seminar on the kinetics of sintering
54. Predictive modeling of post bioprinting structure formation10.1039/C3SM52806E ↗
55. Quantifying the kinetics and morphological changes of the fusion of spheroid building blocks10.1088/1758-5090/8/4/045003 ↗
56. Probing multicellular tissue fusion of cocultured spheroids—a 3D-bioassembly model10.1002/advs.202103320 ↗
57. Post-deposition bioink self-assembly: a quantitative study10.1088/1758-5090/7/4/045005 ↗
58. Viscoelastic modeling of the fusion of multicellular tumor spheroids in growth phase10.1016/j.jtbi.2018.05.005 ↗
59. Fusion dynamics of hybrid cell–microparticle aggregates: a jelly pearl model10.1021/acs.langmuir.1c02949 ↗
60. Continuum theory of active phase separation in cellular aggregates10.1103/PhysRevLett.126.018102 ↗
61. Cell spheroid fusion: beyond liquid drops model10.1038/s41598-020-69540-8 ↗
62. Collagenase treatment appears to improve cartilage tissue integration but damage to collagen networks is likely permanent10.1177/20417314221074207 ↗
63. Compaction, fusion, and functional activation of three-dimensional human mesenchymal stem cell aggregate10.1089/ten.tea.2014.0314 ↗
64. Activity-induced fluidization and arrested coalescence in fusion of cellular aggregates10.3389/fphy.2021.649821 ↗
65. Arrested coalescence of multicellular aggregates10.1039/D2SM00063F ↗
66. Viscoelasticity of multicellular systems caused by collective cell migration: dynamics at the biointerface10.1007/s00249-020-01431-2 ↗
67. Physics of bioprinting10.1063/1.5087206 ↗
68. Physics of cellular self-assembly– a microscopic model and mathematical framework for faster maturation of bioprinted tissues10.1016/j.bprint.2019.e00047 ↗
69. Phase transition of a molecular zipper10.1119/1.1975930 ↗
70. Huang · 1987
71. Cell sorting is analogous to phase ordering in fluids10.1073/pnas.97.17.9467 ↗
72. Acceleration of tissue maturation by mechanotransduction-based bioprinting10.1103/PhysRevResearch.3.013008 ↗
73. Scaffold-free vascular tissue engineering using bioprinting10.1016/j.biomaterials.2009.06.034 ↗
74. Models for the specific adhesion of cells to cells10.1126/science.347575 ↗
75. 3D-printed multi-stimuli-responsive mobile micromachines10.1021/acsami.0c18221 ↗
76. Cellular responses to extracellular guidance cues10.1038/emboj.2010.170 ↗
77. A perspective on 4D bioprinting10.18063/IJB.2016.01.003 ↗
78. The surface evolver10.1080/10586458.1992.10504253 ↗
79. Organ printing: tissue spheroids as building blocks10.1016/j.biomaterials.2008.12.084 ↗
80. Dynamics of cell aggregates fusion: experiments and simulations10.1016/j.physa.2013.10.037 ↗
81. Modeling fusion of cellular aggregates in biofabrication using phase field theories10.1016/j.jtbi.2012.03.003 ↗
82. A phase field approach for multicellular aggregate fusion in biofabrication10.1115/1.4024139 ↗
83. Organ printing: fiction or science
84. Role of physical mechanisms in biological self-organization10.1103/PhysRevLett.95.178104 ↗
85. Fusion of uniluminal vascular spheroids: a model for assembly of blood vessels10.1002/dvdy.22161 ↗
86. VEGF-mediated fusion in the generation of uniluminal vascular spheroids10.1002/dvdy.21720 ↗
87. Tissue engineering by self-assembly of cells printed into topologically defined structures10.1089/tea.2007.0173 ↗
88. Bioprinting of a functional vascularized mouse thyroid gland construct10.1088/1758-5090/aa7fdd ↗
89. Modeling and simulations of multicellular aggregate self-assembly in biofabrication using kinetic Monte Carlo methods10.1039/c2sm27090k ↗
90. In-silico analysis on 3d biofabrication using kinetic monte carlo simulations
91. In-silico analysis on biofabricating vascular networks using kinetic Monte Carlo simulations10.1088/1758-5082/6/1/015008 ↗
92. Relating biophysical properties across scales10.1016/S0070-2153(07)81016-7 ↗
93. ya||a: GPU-powered spheroid models for mesenchyme and epithelium
94. Shape changes of bioprinted tissue constructs simulated by the Lattice Boltzmann method10.1016/j.compbiomed.2015.12.020 ↗
95. Lattice Boltzmann simulations of the time evolution of living multicellular systems
96. Three-dimensional tissue constructs built by bioprinting
97. Computational modeling of tissue self-assembly10.1142/S0217984906011724 ↗
98. Using sacrificial cell spheroids for the bioprinting of perfusable 3D tissue and organ constructs: a computational study10.1155/2019/7853586 ↗
99. A heuristic computational model of basic cellular processes and oxygenation during spheroid-dependent biofabrication10.1088/1758-5090/aa6ed4 ↗
100. Rounding of aggregates of biological cells: experiments and simulations10.1016/j.physa.2005.02.008 ↗