journal article·2017-12

An enzyme-based reversible Controlled NOT (CNOT) logic gate operating on a semiconductor transducer

Elham Honarvarfard, Maria Gamella, Arshak Poghossian, Michael J. Schöning, Evgeny Katz

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Abstract

Abstract An enzyme-based biocatalytic system mimicking operation of a logically reversible Controlled NOT (CNOT) gate has been interfaced with semiconductor electronic transducers. Electrolyte–insulator–semiconductor (EIS) structures have been used to transduce chemical changes produced by the enzyme system to an electronically readable capacitive output signal using field-effect features of the EIS device. Two enzymes, urease and esterase, were immobilized on the insulating interface of EIS structure producing local pH changes performing XOR logic operation controlled by various combinations of the input signals represented by urea and ethyl butyrate. Another EIS transducer was functionalized with esterase only, thus performing Identity (ID) logic operation for the ethyl butyrate input. Both semiconductor devices assembled in parallel operated as a logically reversible CNOT gate. The present system, despite its simplicity, demonstrated for the first time logically reversible function of the enzyme system transduced electronically with the semiconductor devices. The biomolecular realization of a CNOT gate interfaced with semiconductors is promising for integration into complex biomolecular networks and future biosensor/biomedical applications.
Source: openaire · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Electrochemical sensors and biosensors · Advanced biosensing and bioanalysis techniques · Analytical Chemistry and Sensors

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (39)

Show source-provided references
1. 2012
2. Label-free and enzyme-free platform for the construction of advanced DNA logic devices based on the assembly of graphene oxide and DNA-templated AgNCs10.1039/C6NR00032K ↗
3. Biomolecular computing systems: principles, progress and potential10.1038/nrg3197 ↗
4. A simple DNA gate motif for synthesizing large-scale circuits10.1098/rsif.2010.0729 ↗
5. Exercises in molecular computing10.1021/ar5000538 ↗
6. Chemistry at a higher level of abstraction10.1166/jctn.2011.1707 ↗
7. Enzyme-based logic systems for information processing10.1039/b806038j ↗
8. Biocomputing – tools, aims, perspectives10.1016/j.copbio.2015.02.011 ↗
9. Szacilowski · 2012
10. de Silva · 2013
11. 2012
12. T. Sienko (Ed.), in: A. Adamatzky, M. Conrad, N.G. Rambidi (Eds.), Molecular Computing, MIT Press, Cambridge, MA, USA, 2003.10.7551/mitpress/4739.001.0001 ↗
13. A layer of logic10.1038/454417a ↗
14. Molecules that make decisions10.1002/anie.200700879 ↗
15. Information processing with molecules—Quo vadis?10.1002/cphc.201200157 ↗
16. Advanced molecular logic with memory function10.1002/anie.200906705 ↗
17. 2009 · vol. 5715
18. DNA computing: applications and challenges10.1088/0957-4484/17/2/R01 ↗
19. Bridging the two worlds: a universal interface between enzymatic and DNA computing systems10.1002/anie.201411148 ↗
20. Molecular aptamer beacon tuned DNA strand displacement to transform small molecules into DNA logic outputs10.1039/c3cc49833f ↗
21. Towards computing with proteins10.1002/prot.20886 ↗
22. Building logic into peptide networks: bottom-up and top-down10.1002/ijch.201000071 ↗
23. Molecular AND logic gate based on bacterial anaerobic respiration10.1039/c2cc35595g ↗
24. Utilization of a fluidic infrastructure for the realization of enzyme-based Boolean logic operations10.1080/17445760.2016.1213250 ↗
25. Controlled logic gates – switch gate and Fredkin gate based on enzyme-biocatalyzed reactions realized in flow cells10.1002/cphc.201501095 ↗
26. Reversible logic gates based on enzyme-biocatalyzed reactions and realized in flow cells – modular approach10.1002/cphc.201500042 ↗
27. Enzyme-based logic gates and networks with output signals analyzed by various methods10.1002/cphc.201601402 ↗
28. Coupling of biomolecular logic gates with electronic transducers: from single enzyme logic gates to Sense/Act/Treat chips10.1002/elan.201700208 ↗
29. Enzyme logic AND-Reset and OR-Reset gates based on a field-effect electronic transducer modified with multi-enzyme membrane10.1039/C5CC01362C ↗
30. Integration of biomolecular logic gates with field-effect transducers10.1016/j.electacta.2011.01.102 ↗
31. Interfacing of biocomputing systems with silicon chips: enzyme logic gates based on field-effect devices10.1016/j.proche.2009.07.170 ↗
32. Coupling of biocomputing systems with electronic chips: electronic interface for transduction of biochemical information10.1021/jp808320s ↗
33. Demonstration of an all-optical quantum controlled-NOT gate10.1038/nature02054 ↗
34. Demonstration of a fundamental quantum logic gate10.1103/PhysRevLett.75.4714 ↗
35. An enzyme-based reversible CNOT logic gate realized in a flow system10.1039/c4an00133h ↗
36. Realization and properties of biochemical-computing biocatalytic XOR gate based on signal change10.1021/jp107562p ↗
37. Application of ISFETs for pH measurement in rain droplets10.1016/S0925-4005(01)00659-1 ↗
38. CIP (cleaning-in-place) suitable “non-glass” pH sensor based on a Ta2O5-gate EIS structure10.1016/j.snb.2005.03.053 ↗
39. An enzyme-based half-adder and half-subtractor with a modular design10.1002/cphc.201600173 ↗