Analyzing the dynamic behavior of the Gierer–Meinhardt model using finite difference method
Source abstract
Abstract
In this paper, a numerical computation method for the Gierer–Meinhardt model in two-dimensional space diffusion with homogeneous Neumann boundary conditions, considering the interaction between activator and inhibitor substances, is proposed. First, a high-order compact finite difference scheme is constructed for the Gierer–Meinhardt model using the finite difference method. A fourth-order compact difference scheme is applied to the second-order spatial derivative terms, while the time derivative terms are discretized using Taylor series expansion and residual correction functions. Consequently, the difference scheme achieves fourth-order accuracy in space and second-order accuracy in time for the Gierer–Meinhardt model. In addition, the stability of the difference scheme is demonstrated using Fourier analysis. Finally, numerical simulations are conducted on the Gierer–Meinhardt model near its equilibrium point to explore the impact of the inhibitor degradation rate, denoted as E, on the pattern formation. The model exhibits distinct pattern structures with varying E, thereby revealing the relationship between tissue variability and pattern formation in biological systems.
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Research context
OpenAlex topics: Nonlinear Dynamics and Pattern Formation · stochastic dynamics and bifurcation · Ecosystem dynamics and resilience
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
School of Mathematics and Information Science, North Minzu University 1 , Yinchuan 750021, China
School of Civil Engineering, North Minzu University 2 , Yinchuan 750021, China
Funding
National Natural Science Foundation of China under Grant · Natural Science Foundation of Ningxia, China · the Support Plan for Innovation Team of North Minzu University, China · the Support Plan for Leading Personnel of State Ethnic Affairs Commission, China · the Leading Academic Discipline Project of North Minzu University
References (24)
Show source-provided references
1. Regular pattern formation in real ecosystems10.1016/j.tree.2007.10.013 ↗
2. Pattern dynamics of a spatial predator–prey model with noise10.1007/s11071-011-0101-8 ↗
3. Effects of time delay and space on herbivore dynamics: Linking inducible defenses of plants to herbivore outbreak10.1038/srep11246 ↗
4. Interactions of multiple atmospheric circulation drive the drought in tarim river basin10.1038/srep26470 ↗
5. The chemical basis of mokphogenesis10.1098/rstb.1952.0012 ↗
6. A theory of biological pattern formation10.1007/bf00289234 ↗
7. Front motion and localized states in an asymmetric bistable activator-inhibitor system with saturation10.1103/physreve.77.035204 ↗
8. Transitions and heteroclinic cycles in the general Gierer–Meinhardt equation and cardiovascular calcification model10.1016/j.na.2010.04.031 ↗
9. In-silico patterning of vascular mesenchymal cells in three dimensions10.1371/journal.pone.0020182 ↗
10. Wavelength selection mechanism in the Gierer–Meinhardt model10.1007/bf02458442 ↗
11. Gierer–Meinhardt model: Bifurcation analysis and pattern formation10.3923/tasr.2008.115.128 ↗
12. Pattern dynamics of a Gierer–Meinhardt model with spatial effects10.1007/s11071-016-3317-9 ↗
13. A linearized compact difference scheme for a class of nonlinear delay partial differential equations10.1016/j.apm.2012.02.036 ↗
14. Three level implicit tension spline scheme for solution of convection-reaction-diffusion equation10.1016/j.asej.2016.10.005 ↗
15. A two-level linearized compact adi scheme for two-dimensional nonlinear reaction–diffusion equations10.1016/j.camwa.2018.01.013 ↗
16. A compact finite difference scheme for reaction-convection-diffusion equation
17. A novel compact ADI scheme for two-dimensional Riesz space fractional nonlinear reaction–diffusion equations10.1016/j.amc.2018.10.065 ↗
18. The Rothe–Newton approach to simulate the variable coefficient convection-diffusion equations
19. Higher order accurate difference solutions of fluid mechanics problems by a compact differencing technique10.1016/0021-9991(75)90118-7 ↗
20. Compact finite difference schemes with spectral-like resolution10.1016/0021-9991(92)90324-r ↗
21. High-order blended compact difference schemes for the 3D elliptic partial differential equation with mixed derivatives and variable coefficients
22. Compact high order accurate schemes for the three dimensional wave equation10.1007/s10915-019-00970-x ↗
23. W. Jianying , “High-order compact difference method for the convection diffusion reaction equations and its applications in epidemic models (Chinese),” Ph.D. thesis, Ningxia University, 2022.
24. The extrapolation method of five-point numerical formulas for one-order derivative