journal article·2021-01-01Open access

Mechanical characterization of P2 bacteriophage by using Young’s modulus measurements

Seong Soo Choi, Kyoung Jin Kim

AIP Advances· Volume 11· Issue 1

Abstract

The bacteriophage P2 capsids have been characterized by transmission electron microscopy and atomic force microscopy (AFM). Studies have been carried out on fully filled and 2/3 filled capsids containing dsDNA genomes. In order to get the quantitative information of the capsid, a nanoindentation technique depending on the tip-shape and an effective spring constant technique with a homogeneous capsid shell model were adopted. The contact region of the AFM contact force curve in an approach mode has been used for the calculation of Young’s moduli as well as the internal pressures of the capsids. By using the continuum theory of elasticity of thin homogeneous capsid shells, Young’s moduli of fully filled and 2/3 filled phage capsids are measured to be 1.17 ± 0.10 GPa and 0.87 ± 0.10 GPa, respectively. These values are close to other reported results. Analysis of the force curves also presented that a fully filled capsid reveals a higher internal pressure than that of a 2/3 filled capsid.
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Research context

OpenAlex topics: Bacteriophages and microbial interactions · Microstructure and mechanical properties · Monoclonal and Polyclonal Antibodies Research

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Research Center for Nano-Bio Science, SunMoon University 1 , Ahsan 31460, South Korea

Department of Pharmaceutical Engineering and Biotechnology, SunMoon University 2 , Ahsan 31460, South Korea

Funding

National Research Foundation of Korea

References (39)

Show source-provided references
1. Virioplankton: Viruses in aquatic ecosystems10.1128/mmbr.64.1.69-114.2000 ↗
2. Bacteriophage capsids: Tough nanoshells with complex elastic properties10.1073/pnas.0308198101 ↗
3. Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and strength10.1073/pnas.0601744103 ↗
4. Internal DNA pressure modifies stability of WT phage10.1073/pnas.0703166104 ↗
5. Structural remodeling of bacteriophage T4 and host membranes during infection initiation10.1073/pnas.1501064112 ↗
6. Bacteriophage T4 genome10.1128/mmbr.67.1.86-156.2003 ↗
7. The bacteriophage Φ29 portal motor can package DNA against a large internal force10.1038/35099581 ↗
8. Mechanical limits of viral capsids10.1073/pnas.0611472104 ↗
9. DNA packaging and ejection forces in bacteriophage10.1073/pnas.241486298 ↗
10. Forces and pressures in DNA packaging and release from viral capsids10.1016/s0006-3495(03)74971-6 ↗
11. Mechanics of DNA packaging in viruses10.1073/pnas.0737893100 ↗
12. The effect of genome length on ejection forces in bacteriophage lambda10.1016/j.virol.2006.01.003 ↗
13. Osmotic pressure inhibition of DNA ejection from phage10.1073/pnas.1233721100 ↗
15. Bacteriophage P2: Physical, genetic and restriction map
16. Bacteriophage P4: A satellite virus depending on a helper such as prophage P210.1016/0042-6822(73)90432-7 ↗
17. The P2-like phages and their parasite, P4
18. Determination of capsid size by satellite bacteriophage P410.1073/pnas.75.1.400 ↗
19. Mutational analysis of the bacteriophage P4 capsid-size determining gene10.1006/viro.1996.0269 ↗
20. Packaging of the bacteriophage lambda chromosome: Effect of chromosome length10.1016/0042-6822(77)90425-1 ↗
21. Image reconstruction from cryo-electron micrographs reveals the morphopoietic mechanism in the P2-P4 bacteriophage system10.1002/j.1460-2075.1992.tb05121.x ↗
22. Construction and characterization of the bacteriophage P4 derivatives whose genome size suitable for packaging into a P2sir3-sized head10.7845/kjm.2015.5009 ↗
23. Structure of 3-aminopropyl triethoxy silane on silicon oxide10.1016/0021-9797(91)90139-y ↗
24. How to prepare reproducible, homogeneous, and hydrolytically stable aminosilane-derived layers on silica10.1021/la203638g ↗
25. Physical characteristics of Saccharomyces cerevisiae10.1002/sia.2899 ↗
26. Measuring adhesion, attraction, and repulsion between surfaces in liquids with an atomic-force microscope10.1103/physrevb.45.11226 ↗
27. Adhesion between elastic cylinders based on the double-Hertz model10.1016/j.ijsolstr.2014.04.003 ↗
28. Bacteriophage P2 and P4 morphogenesis: Assembly precedes proteolytic processing of the capsid proteins10.1006/viro.1994.1619 ↗
29. The charge of glass and silica surfaces10.1063/1.1404988 ↗
30. Bacteriophage P2 and P4 assembly: Alternative scaffolding proteins regulate capsid size10.1006/viro.1994.1234 ↗
31. Atomic force microscopy of bacteriophage T4 and its tube-baseplate complex10.1016/0014-5793(93)81756-p ↗
32. Measuring elasticity of biological materials by atomic force10.1016/s0014-5793(98)00592-4 ↗
33. Elastic deformations of tip and sample during atomic force microscope measurements10.1116/1.588525 ↗
34. Deformation and height anomaly of soft surfaces studied with an AFM10.1088/0957-4484/4/2/006 ↗
35. Young’s modulus of silicon nitride used in scanning force microscope cantilevers10.1063/1.1638886 ↗
36. Mapping the local Young’s modulus by analysis of the elastic deformations occurring in atomic force microscopy10.1088/0957-4484/6/1/003 ↗
37. 1986
38. The relation between load and penetration in the axisymmetric Boussinesq problem for a punch of arbitrary profile10.1016/0020-7225(65)90019-4 ↗
39. Measurements of DNA lengths remaining in a viral capsid after osmotically suppressed partial ejection10.1529/biophysj.104.045088 ↗