journal article·2020-11-01Open access

Mouse livers machine learning identification based on hyperspectral x-ray computed tomography reconstructed x-ray absorption spectra

Zheng Fang, Shuo Zhong, Weifeng Hu, Siyuan Cheng

AIP Advances· Volume 10· Issue 11

Abstract

X-ray computed tomography (X-CT) is often used to examine organs, but the reconstructed images can only be used for structural identification. Whether the organs are healthy or not requires a professional doctor to examine the reconstructed image and judge from his or her own experience. The purpose of this paper is to identify the cirrhotic mouse liver and normal mouse liver with hyperspectral x-ray CT (HXCT) and machine learning. HXCT is proposed to reconstruct the x-ray absorption spectrum (XAS) characteristics of a single pixel in the reconstructed mouse liver images. HXCT uses a cadmium telluride photon counter as the x-ray detector, which can improve the spectral resolution and separate spectral lines. Filtered back-projection and algebra reconstruction technique reconstruction algorithms are used for image and XAS reconstruction. In the machine learning model, principal component analysis is utilized to reduce the dimensionality of XAS. Besides, the neural network algorithm Artificial Neural Network (ANN) is used to train and identify the reconstructed XAS of two different kinds of livers. These two different mouse livers can be well recognized since the accuracy goes to almost 100% based on ANN. It is feasible to employ the machine learning algorithm to identify the XAS of different mouse livers.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Advanced X-ray and CT Imaging · Medical Imaging Techniques and Applications · Infrared Thermography in Medicine

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

School of Aerospace Engineering, Xiamen University , Xiamen 361101, China

Funding

National Natural Science Foundation of China

References (29)

Show source-provided references
1. J. Anal. At. Spectrom. · 2016 · 31 · 110510.1039/c6ja00024j ↗
2. A new portable XRD/XRF instrument for non-destructive analysis
3. J. Radioanal. Nucl. Chem. · 2016 · 307 · 75110.1007/s10967-015-4105-6 ↗
4. Comparison of the accuracy of powder and single-crystal X-ray diffraction techniques in determining organic crystal structure10.1007/s11434-013-0074-8 ↗
5. The all-seeing eye of resonant Auger electron spectroscopy: A study on aqueous solution using tender X-rays10.1021/acs.jpclett.8b01783 ↗
6. Design and performance of a new setup for spatially resolved transmission X-ray photoelectron spectroscopy at the Swiss Light Source10.1107/s1600577519002984 ↗
7. Performance of today’s dual energy CT and future multi energy CT in virtual non-contrast imaging and in iodine quantification: A simulation study10.1118/1.4922654 ↗
8. Generalized image combinations in dual KVP digital radiography10.1118/1.595025 ↗
9. Industrial applications of computed tomography10.1016/j.cirp.2014.05.011 ↗
10. A systematic review and economic evaluation of new-generation computed tomography scanners for imaging in coronary artery disease and congenital heart disease: Somatom Definition Flash, Aquilion ONE, Brilliance iCT and Discovery CT750 HD10.3310/hta17090 ↗
11. Rising incidence of hepatocellular carcinoma in the United States10.1056/nejm199903113401001 ↗
12. Growth rate of asymptomatic hepatocellular carcinoma and its clinical implications10.1016/0016-5085(85)90324-5 ↗
13. Small hepatocellular carcinomas in cirrhotic explant livers: Identification by macroscopic examination and lipiodol localization10.1002/hep.510250320 ↗
14. Hepatocellular carcinoma and dysplastic nodules in patients with cirrhosis: Prospective diagnosis with MR imaging and explantation correlation10.1148/radiology.219.2.r01ma40445 ↗
15. Imaging properties of small-pixel spectroscopic x-ray detectors based on cadmium telluride sensors10.1088/0031-9155/57/21/6743 ↗
16. Differentiation of small hepatic hemangioma from small hepatocellular carcinoma: Recently introduced spectral CT method10.1148/radiol.11101425 ↗
17. Focal cystic high-attenuation lesions: Characterization in renal phantom by using photon-counting spectral CT—Improved differentiation of lesion composition10.1148/radiol.09090068 ↗
18. Photon counting spectral CT component analysis of coronary artery atherosclerotic plaque samples10.1259/bjr.20130798 ↗
19. Principal component analysis10.1016/0169-7439(87)80084-9 ↗
20. A prototype system to measure X-ray absorption spectra for diagnosis in vivo10.1016/j.measurement.2016.07.038 ↗
21. 2001
22. Algebraic Reconstruction Techniques (ART) for three-dimensional electron microscopy and X-ray photography10.1016/0022-5193(70)90109-8 ↗
23. Efficient hierarchical-PCA dimension reduction for hyperspectral imagery
24. Principal component analysis10.1002/wics.101 ↗
25. Rectified linear units improve restricted Boltzmann machines
26. Medical image classification with convolutional neural network
27. Deep learning10.1038/nature14539 ↗
28. Performance evaluation of classification algorithms by k-fold and leave-one-out cross validation10.1016/j.patcog.2015.03.009 ↗
29. Performance analysis of naive bayes and J48 classification algorithm for data classification