journal article·2019-08-01Open access

Comparative studies of total-variation-regularized sparse reconstruction algorithms in projection tomography

Hui Xie, Huiyuan Wang, Lin Wang, Nan Wang, Jimin Liang, Yonghua Zhan, Xueli Chen

AIP Advances· Volume 9· Issue 8

Abstract

Projection tomography techniques, such as optical projection tomography and stimulated Raman projection tomography, can efficiently provide quantitative distributions of compositions in three-dimensional volumes that are isotropic and exhibit high spatial resolutions. A projection model and a reconstruction algorithm are two important elements of such techniques. This research explores the quality vs. efficiency tradeoffs for combinations of existing algorithms in a performance study. Two projection models are used. This first is the pixel vertex driven projection model; and the second is the distance driven projection model (DDM). These models are integrated with three TV-regularized iterative reconstruction algorithms: the algebraic reconstruction technique, the simultaneous algebra reconstruction technique (SART), and the two-step iterative shrinkage/thresholding algorithm. The performance of the combinations of these projection models and reconstruction algorithms are evaluated with a sparsely sampled data set in simulation experiments. The experiments consider both the reconstruction image quality and the time complexity. The comparative results indicate the combination of the SART and DDM algorithms provide a good balance between the quality and efficiency of reconstructed images. The exploratory results of this study are expected to provide some useful guidance on algorithmic development and applications in the projection tomography field.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Medical Imaging Techniques and Applications · Sparse and Compressive Sensing Techniques · Photoacoustic and Ultrasonic Imaging

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Engineering Research Center of Molecular and Neuro Imaging of Ministry of Education 1 , Xi’an, Shaanxi 710126, China

School of Life Science and Technology, Xidian University 2 , Xi’an, Shaanxi 7101261, China

School of Information Sciences and Technology, Northwest University 3 , Xi’an, Shaanxi 710127, China

Funding

Best Funded Projects for the Scientific and Technological Activities for Excellent Overseas Researchers in Shaanxi Province · National Key R&D program of China · Program for the Young Top-notch Talent of Shaanxi Province · Research Fund for Young Star of Science and Technology in Shaanxi Province · Fok Ying Tung Education Foundation · National Natural Science Foundation of China

References (38)

Show source-provided references
1. Nat. Meth. · 2013 · 10 · 42110.1038/nmeth.2411 ↗
2. Phys. Med. Biol. · 2008 · 53 · 386310.1088/0031-9155/53/14/010 ↗
3. Nat. Meth. · 2015 · 12 · 2310.1038/nmeth.3219 ↗
4. Nat. Commun. · 2016 · 7 · 1108810.1038/ncomms11088 ↗
5. Nat. Meth. · 2012 · 9 · 20110.1038/nmeth.1851 ↗
6. Nat. Commun. · 2014 · 5 · 399710.1038/ncomms4997 ↗
7. Science · 2015 · 350 · aaa887010.1126/science.aaa8870 ↗
8. Science · 2002 · 296 · 54110.1126/science.1068206 ↗
9. J. Anat. · 2003 · 202 · 17510.1046/j.1469-7580.2003.00155.x ↗
10. J. Histochem. Cytochem. · 2011 · 59 · 12910.1369/0022155410394857 ↗
11. Nat. Meth. · 2017 · 14 · 36010.1038/nmeth.4224 ↗
12. Nat. Meth. · 2007 · 4 · 31110.1038/nmeth1017 ↗
13. Science · 2008 · 322 · 106510.1126/science.1162493 ↗
14. Nat. Meth. · 2013 · 10 · 41310.1038/nmeth.2434 ↗
15. Science · 2014 · 346 · 43910.1126/science.1257998 ↗
16. J. Microsc. · 2015 · 260 · 3010.1111/jmi.12263 ↗
17. Nat. Meth. · 2008 · 5 · 60910.1038/nmeth.1219 ↗
18. IEEE Trans. Med. Imaging · 2012 · 31 · 135810.1109/tmi.2012.2188836 ↗
19. Biomed. Opt. Express · 2011 · 2 · 134010.1364/boe.2.001340 ↗
20. Zebrafish · 2017 · 14 · 57410.1089/zeb.2017.1418 ↗
21. Nat. Commun. · 2017 · 8 · 1511710.1038/ncomms15117 ↗
22. 2010
23. J. X-ray Sci. Technol. · 2006 · 14 · 119
24. Phys. Med. Biol. · 2012 · 57 · 17310.1088/0031-9155/57/1/173 ↗
25. Phys. Med. Biol. · 2017 · 62 · 252110.1088/1361-6560/aa5ed2 ↗
26. Plos One · 2015 · 10 · e013621310.1371/journal.pone.0136213 ↗
27. IEEE Access · 2018 · 6 · 146110.1109/access.2017.2779148 ↗
28. Phys. Med. Biol. · 2009 · 54 · 279110.1088/0031-9155/54/9/014 ↗
29. Phys. Med. Biol. · 2016 · 61 · 842510.1088/0031-9155/61/24/8425 ↗
30. Phys. Med. Biol. · 2013 · 58 · 211910.1088/0031-9155/58/7/2119 ↗
31. SPIE · 2015 · 9412
32. Phy. Med. Biol. · 2004 · 49 · 246310.1088/0031-9155/49/11/024 ↗
33. Accelerated stimulated Raman projection tomography by sparse reconstruction from few-views data
34. IEEE Trans. Med. Imaging · 2010 · 29 · 183910.1109/tmi.2010.2050898 ↗
35. J. Theoretic. Biol. · 1970 · 29 · 47110.1016/0022-5193(70)90109-8 ↗
36. Ultrasonic. Imaging · 1984 · 6 · 8110.1177/016173468400600107 ↗
37. IEEE Trans. Image Process. · 2007 · 16 · 299210.1109/tip.2007.909319 ↗
38. IEEE Trans. Image Process. · 2004 · 13 · 60010.1109/tip.2003.819861 ↗