journal article·2023-12-01Open access

Murburn concept in cellular function and bioenergetics, Part 1: Understanding murzymes at the molecular level

Kelath Murali Manoj, Laurent Jaeken, Nikolai Mikhailovich Bazhin, Hirohisa Tamagawa, Mahendra Kavdia, Afsal Manekkathodi

AIP Advances· Volume 13· Issue 12

Abstract

Bioenergetics is the study of how life-activities are powered within the cell. This also deals with the interactive exchange of matter/radiation between cellular components and their environment, and the accompanying changes thereof. The acclaimed bioenergetics paradigm has relied on “electron transport chains” and selective/stoichiometric electrogenic “ion-pumping” mediated by vectorial protein-embedded membranes. Therein, an electrochemical gradient was deemed to be the driving force for chemical reactions leading to ATP production, physical thermogenesis by uncoupling proteins, and complex electromechanical processes like information relay along the axon. On one hand, this vitally deterministic perception requires the membrane proteins to “intelligently” manipulate ion-fluxes and generate/harness an electrochemical gradient by a gambit-type logic. At the other hand, it also seeks that the same gradient should cyclically control the membrane-proteins’ activity. Our recent pursuits have questioned such traditional perspectives and advocated the alternate explanation of murburn concept, leading to a revamping of the macroscopic treatments of overall thermodynamic, kinetic, mechanistic, and evolutionary (probability) considerations. The current review aims to consolidate the murburn paradigm of bioenergetics, wherein murzymes initiate redox processes by effective charge separation and diffusible reactive species formation, enabling cells to work as simple chemical engines. Herein, we discuss the reaction chemistry of some simple enzyme systems and also delve into protein complex arrays mediated powering routines like mitochondrial respiration-thermogenesis and chloroplast-centered photosynthesis. Furthermore, we remark that the “water–ion–molecules” phase continuum is actually discretized into dynamically fluctuating coacervates and express concern over the marginalization of sound chemico-physical ideas by the bioenergetics community.
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Research context

OpenAlex topics: Mitochondrial Function and Pathology · Photosynthetic Processes and Mechanisms · Photoreceptor and optogenetics research

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Satyamjayatu: The Science and Ethics Foundation, Kulappully 1 , Shoranur-2 (PO), Palakkad District, Kerala 679122, India

School of Artificial Intelligence, Amrita Vishwa Vidyapeetham (Amrita University - Coimbatore Campus) 2 , Amritanagar, Coimbatore 641112, Tamil Nadu, India

Karel de Grote-Hogeschool, Antwerp University Association, Department of Industrial Sciences and Technology 3 , Salesianenlaan 90, Antwerp 2660, Belgium

Institute of Chemical Kinetics and Combustion, Russian Academy of Sciences 4 , St. Institutskaya 3, 630090 Novosibirsk, Russia

Department of Mechanical Engineering, Gifu University 5 , 1-1 Yanagido, Gifu City 501-1193, Japan

Department of Biomedical Engineering, Wayne State University 6 , Detroit, Michigan 48201, USA

Department of Physics, Sultan Qaboos University 7 , P.O. Box 36, P.C. 123, Al-Khodh, Muscat, Oman

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