journal article·2026-06-15Open access

T2T Genome Assembly and Multi‐Omics Data Reveal Terrestrial Adaptation and Mucus Biosynthesis in Tropical Leatherleaf Slug ( Laevicaulis alte )

Gang Wang, Shaofang He, Zhongkai Wang, Aobo Pang, Xiaoli Sun, Rongchen Liu, Fang Wang, Sisi Chen, Zhijuan Bian, Dongcheng Wei, Liuhan Wu, Siyao Zhao, Qiuting Ji, Yiqi Sun, Niying Sun, Yushinta Fujaya, Boping Tang, Kianann Tan, Daizhen Zhang, Lianfu Chen

Abstract

ABSTRACT Laevichaulis alte is a slug in the order Systellommatophora that evolved from aquatic ancestors and now faces strong challenges from desiccation, respiration on land, and novel pathogens. Its mucus is essential for water retention, locomotion, and defense. To link terrestrial adaptation with mucus biosynthesis, we generated a gap‐free genome assembly of L. alte using PacBio HiFi reads, Oxford Nanopore ultra‐long reads, and Hi‐C data. The genome shows low heterozygosity and holocentromeric chromosomes. Functional metabolomics revealed marked metabolic shifts between L. alte and the closely related aquatic species Peronia verruculata . In L. alte , differential metabolites were enriched in lipid metabolism, immune regulation, and stress response pathways, consistent with life in a dry and microbe‐rich terrestrial environment. Comparative genomics and transcriptomics identified candidate genes linked to mucus secretion and physiological adaptation, including VEGF , ASGR2 , and COL6A6 . Further analyses highlighted the vascular endothelial growth factor (VEGF) gene family as a key regulator connecting angiogenesis, tissue remodeling, and mucus production pathways in L. alte . Together, this gap‐free genome and multi‐omics dataset establish a molecular framework that links genomic innovation, mucus biology, and terrestrial adaptation in Systellommatophora, and they offer a basis for understanding ecological niche specialization in land molluscs.
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Research context

OpenAlex topics: Mollusks and Parasites Studies · Aquatic Invertebrate Ecology and Behavior · Marine Bivalve and Aquaculture Studies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection Yancheng Teachers University Yancheng China

College of Plant Science and Technology Huazhong Agricultural University Wuhan China

Wuhan Carboncode Biotechnologies Co., Ltd. Wuhan China

New Cornerstone Science Laboratory Northwestern Polytechnical University Xi'an China

Guangxi Key Lab for Sugarcane Biology Guangxi University Nanning China

Faculty of Marine Science and Fisheries Hasanuddin University Makassar Indonesia

Guangxi Key Laboratory of Beibu Gulf Marine Biodiversity Conservation Beibu Gulf University Qinzhou China

Funding

National Natural Science Foundation of China

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