journal article·2026-03Open access

Design and Characterization of DX‐Tile DNA Nanostar‐Based Hydrogels

Dylan V. Scarton, Alessandra B. Coogan, Peter M. Touma, Eray O. Tulun, Katie A. Harrison, Jack Buchen, Richard C. Steiner, Christopher R. Fellin, Hunter G. Mason, Chih‐Hsiang Hu, Sally Farag, Xiaoning Yuan, Shailly Jariwala, Remi Veneziano

Advanced Science· Volume 13· Issue 18

Abstract

ABSTRACT Pure deoxyribonucleic acid (DNA) hydrogels synthesized via the hybridization of multi‐arm DNA tiles (DNA nanostars) are uniquely programmable and functionalizable biomaterials, suitable for applications ranging from biosensing to cell‐free protein production and soft tissue engineering. However, the full potential offered by DNA molecules in terms of design flexibility and functionalization has not yet been leveraged for pure DNA hydrogels, thus reducing their versatility and broader use. In this study, we introduce multi‐arm double‐crossover (DX)‐tile motifs, often used in wireframe DNA nanoparticles assembly, to enable greater control over the hydrogel's mechanical properties and facilitate functionalization. Specifically, we demonstrate that modifying structural design parameters, such as the arm geometry, length, valency, and linker design, allows for fine control of the elastic modulus and viscoelastic properties of the hydrogels. We also show that their functionalization can be performed without compromising the hydrogels' physical properties and exhibit enhanced mechanical strength and tunable properties, compared to simple duplex‐based DNA hydrogels. Furthermore, these DNA hydrogels demonstrated printability and scalability, which pave the way toward the development of novel formulations and bioinks for the rational design of soft tissue engineering scaffolds and broaden the use of DNA hydrogels for other biomedical applications.
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Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · DNA and Nucleic Acid Chemistry · DNA and Biological Computing

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Interdisciplinary Program in Neuroscience College of Science George Mason University Fairfax Virginia USA

Institute for Advanced Biomedical Research George Mason University Manassas Virginia USA

Department of Bioengineering College of Engineering and Computing George Mason University Fairfax Virginia USA

Henry Jackson Foundation for the Advancement of Military Medicine, Inc. Bethesda Maryland USA

Department of Physical Medicine and Rehabilitation Center for Rehabilitation Sciences Research Uniformed Services University of the Health Sciences Bethesda Maryland USA

School of System Biology College of Science George Mason University Manassas Virginia USA

Center for Infectious Diseases George Mason University Manassas Virginia USA

Funding

Cosmos Club Foundation · Uniformed Services University of the Health Sciences · U.S. Army Medical Research Acquisition Activity

References (78)

Show source-provided references
1. 10.1007/s12033-007-0059-410.1007/s12033-007-0059-4 ↗
2. 10.1038/nature0458610.1038/nature04586 ↗
3. 10.1038/nnano.2011.18710.1038/nnano.2011.187 ↗
4. 10.3389/fchem.2020.0002810.3389/fchem.2020.00028 ↗
5. 10.1021/ma801414p10.1021/ma801414p ↗
6. 10.1002/app.3855010.1002/app.38550 ↗
7. 10.1016/j.actbio.2020.01.02110.1016/j.actbio.2020.01.021 ↗
8. 10.3390/polym1110160710.3390/polym11101607 ↗
9. 10.1016/j.mattod.2022.12.00310.1016/j.mattod.2022.12.003 ↗
10. 10.1016/j.mtbio.2022.10043010.1016/j.mtbio.2022.100430 ↗
11. 10.1038/s41565-023-01483-310.1038/s41565-023-01483-3 ↗
12. 10.1016/j.fmre.2024.04.00110.1016/j.fmre.2024.04.001 ↗
13. 10.1002/adfm.20190591110.1002/adfm.201905911 ↗
14. 10.1038/nnano.2012.21110.1038/nnano.2012.211 ↗
15. 10.1002/adfm.20190625310.1002/adfm.201906253 ↗
16. 10.3390/app1104188510.3390/app11041885 ↗
17. 10.1038/nmat174110.1038/nmat1741 ↗
18. 10.1002/adma.20100334310.1002/adma.201003343 ↗
19. 10.3390/bios1506035510.3390/bios15060355 ↗
20. 10.1002/cbic.20150068610.1002/cbic.201500686 ↗
21. 10.1039/C6SM00283H10.1039/C6SM00283H ↗
22. 10.1073/pnas.181968311610.1073/pnas.1819683116 ↗
23. 10.1039/C9SM01398A10.1039/C9SM01398A ↗
24. 10.1039/D2SM00221C10.1039/D2SM00221C ↗
25. 10.1002/adma.20230712910.1002/adma.202307129 ↗
26. 10.1073/pnas.172220611510.1073/pnas.1722206115 ↗
27. 10.1002/marc.20220028110.1002/marc.202200281 ↗
28. 10.1016/j.asems.2024.10011310.1016/j.asems.2024.100113 ↗
29. 10.1002/anie.20090253810.1002/anie.200902538 ↗
30. 10.1073/pnas.211260411810.1073/pnas.2112604118 ↗
31. 10.1073/pnas.172220611510.1073/pnas.1722206115 ↗
32. 10.1039/C5NR00858A10.1039/C5NR00858A ↗
33. 10.3390/gels903023910.3390/gels9030239 ↗
34. 10.1186/s12951-024-02791-z10.1186/s12951-024-02791-z ↗
35. 10.1126/science.aaf438810.1126/science.aaf4388 ↗
36. 10.1016/S0006-3495(03)75110-810.1016/S0006-3495(03)75110-8 ↗
37. 10.1002/cphc.20060026010.1002/cphc.200600260 ↗
38. 10.1021/jacs.6b0396610.1021/jacs.6b03966 ↗
39. 10.1016/S0022-2836(05)80360-210.1016/S0022-2836(05)80360-2 ↗
40. 10.1101/2025.05.14.65394410.1101/2025.05.14.653944 ↗
41. 10.1002/smtd.20250029510.1002/smtd.202500295 ↗
42. 10.1073/pnas.103295410010.1073/pnas.1032954100 ↗
43. 10.1038/nchem.107010.1038/nchem.1070 ↗
44. 10.1089/ten.teb.2009.063910.1089/ten.teb.2009.0639 ↗
45. 10.1021/acsbiomaterials.1c0108510.1021/acsbiomaterials.1c01085 ↗
46. 10.1016/j.bioadv.2024.21404010.1016/j.bioadv.2024.214040 ↗
47. 10.1016/j.mtbio.2022.10044010.1016/j.mtbio.2022.100440 ↗
48. 10.1073/pnas.222056512010.1073/pnas.2220565120 ↗
49. 10.3390/gels704025510.3390/gels7040255 ↗
50. 10.1021/acs.nanolett.4c0187010.1021/acs.nanolett.4c01870 ↗
51. 10.1038/s41427-022-00445-w10.1038/s41427-022-00445-w ↗
52. 10.1002/anie.20241111510.1002/anie.202411115 ↗
53. 10.1016/S0006-3495(97)78780-010.1016/S0006-3495(97)78780-0 ↗
54. 10.1021/bi00064a00310.1021/bi00064a003 ↗
55. 10.1021/ja993393e10.1021/ja993393e ↗
56. 10.1021/ja038381e10.1021/ja038381e ↗
57. 10.1016/j.bpj.2022.09.03610.1016/j.bpj.2022.09.036 ↗
58. 10.1021/acsbiomaterials.0c0112510.1021/acsbiomaterials.0c01125 ↗
59. 10.1016/j.actbio.2014.05.02310.1016/j.actbio.2014.05.023 ↗
60. 10.1073/pnas.121549811010.1073/pnas.1215498110 ↗
61. 10.3389/fbioe.2021.66140910.3389/fbioe.2021.661409 ↗
62. 10.1016/j.mser.2020.10054310.1016/j.mser.2020.100543 ↗
63. 10.1002/advs.20220571310.1002/advs.202205713 ↗
64. 10.1016/j.tibtech.2019.10.00110.1016/j.tibtech.2019.10.001 ↗
65. 10.1021/jacs.2c0659910.1021/jacs.2c06599 ↗
66. 10.1016/j.biomaterials.2014.08.00110.1016/j.biomaterials.2014.08.001 ↗
67. 10.1039/D3SM00475A10.1039/D3SM00475A ↗
68. 10.3390/biomedicines1002021310.3390/biomedicines10020213 ↗
69. 10.1021/nl502626s10.1021/nl502626s ↗
70. 10.1021/acsami.3c0569010.1021/acsami.3c05690 ↗
71. 10.1038/s41427-023-00470-310.1038/s41427-023-00470-3 ↗
72. 10.1021/acs.chemrev.3c0002810.1021/acs.chemrev.3c00028 ↗
73. 10.1021/acs.chemrev.6b0082510.1021/acs.chemrev.6b00825 ↗
74. 10.1007/978-3-642-03076-5_810.1007/978-3-642-03076-5_8 ↗
75. 10.1002/jcc.2602910.1002/jcc.26029 ↗
76. 10.1093/nar/gnj03110.1093/nar/gnj031 ↗
77. 10.1038/nmeth.208910.1038/nmeth.2089 ↗
78. Gwyddion: An Open‐source Software for SPM Data Analysis