journal article·2024-11Open access

TAG‐SPARK: Empowering High‐Speed Volumetric Imaging With Deep Learning and Spatial Redundancy

Yin‐Tzu Hsieh, Kai‐Chun Jhan, Jye‐Chang Lee, Guan‐Jie Huang, Chang‐Ling Chung, Wun‐Ci Chen, Ting‐Chen Chang, Bi‐Chang Chen, Ming‐Kai Pan, Shun‐Chi Wu, Shi‐Wei Chu

Advanced Science· Volume 11· Issue 41

Abstract

Abstract Two‐photon high‐speed fluorescence calcium imaging stands as a mainstream technique in neuroscience for capturing neural activities with high spatiotemporal resolution. However, challenges arise from the inherent tradeoff between acquisition speed and image quality, grappling with a low signal‐to‐noise ratio (SNR) due to limited signal photon flux. Here, a contrast‐enhanced video‐rate volumetric system, integrating a tunable acoustic gradient (TAG) lens‐based high‐speed microscopy with a TAG‐SPARK denoising algorithm is demonstrated. The former facilitates high‐speed dense z‐sampling at sub‐micrometer‐scale intervals, allowing the latter to exploit the spatial redundancy of z‐slices for self‐supervised model training. This spatial redundancy‐based approach, tailored for 4D (xyzt) dataset, not only achieves >700% SNR enhancement but also retains fast‐spiking functional profiles of neuronal activities. High‐speed plus high‐quality images are exemplified by in vivo Purkinje cells calcium observation, revealing intriguing dendritic‐to‐somatic signal convolution, i.e., similar dendritic signals lead to reverse somatic responses. This tailored technique allows for capturing neuronal activities with high SNR, thus advancing the fundamental comprehension of neuronal transduction pathways within 3D neuronal architecture.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Advanced Fluorescence Microscopy Techniques · Optical Coherence Tomography Applications · Cell Image Analysis Techniques

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Graduate Institute of Electronics Engineering National Taiwan University Taipei 10617 Taiwan

Department of Engineering and System Science National Tsing Hua University Hsinchu 30013 Taiwan

Molecular Imaging Center National Taiwan University Taipei 10617 Taiwan

Department of Physics National Taiwan University Taipei 10617 Taiwan

Research Center for Applied Sciences (RCAS) Academia Sinica Taipei 115 Taiwan

Department of Medical Research National Taiwan University Hospital Taipei 10002 Taiwan

Department and Graduate Institute of Pharmacology National Taiwan University College of Medicine Taipei 10002 Taiwan

Brain Research Center National Tsing Hua University Hsinchu 30013 Taiwan

Institute of Biomedical Sciences Academia Sinica Taipei 11529 Taiwan

Funding

National Science and Technology Council · National Taiwan University Hospital · National Taiwan University

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