journal article·2025-03Open access

Scale‐free Spatio‐temporal Correlations in Conformational Fluctuations of Intrinsically Disordered Proteins

Haoyu Song, Jian Cui, Guorong Hu, Long Xiong, Yanee Wutthinitikornkit, Hai Lei, Jingyuan Li

Advanced Science· Volume 12· Issue 9

Abstract

Abstract The self‐assembly of intrinsically disordered proteins (IDPs) into condensed phases and the formation of membrane‐less organelles (MLOs) can be considered as the phenomenon of collective behavior. The conformational dynamics of IDPs are essential for their interactions and the formation of a condensed phase. From a physical perspective, collective behavior and the emergence of phase are associated with long‐range correlations. Here the conformational dynamics of IDPs and the correlations therein are analyzed, using µs‐scale atomistic molecular dynamics (MD) simulations and single‐molecule Förster resonance energy transfer (smFRET) experiments. The existence of typical scale‐free spatio‐temporal correlations in IDP conformational fluctuations is demonstrated. Their conformational evolutions exhibit “1/f noise” power spectra and are accompanied by the appearance of residue domains following a power‐law size distribution. Additionally, the motions of residues present scale‐free behavioral correlation. These scale‐free correlations resemble those in physical systems near critical points, suggesting that IDPs are poised at a critical state. Therefore, IDPs can effectively respond to finite differences in sequence compositions and engender considerable structural heterogeneity which is beneficial for IDP interactions and phase formation.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: RNA Research and Splicing · Material Dynamics and Properties · Protein Structure and Dynamics

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

School of Physics Zhejiang University Hangzhou 310058 PR China

Collaborative Innovation Center of Advanced Microstructures National Laboratory of Solid State Microstructure Department of Physics Nanjing University Nanjing 210093 PR China

School of Physics and Astronomy Yunnan University Kunming 650091 PR China

Funding

National Natural Science Foundation of China

References (75)

Show source-provided references
1. 10.1126/science.aaf438210.1126/science.aaf4382 ↗
2. 10.1038/nrm.2017.710.1038/nrm.2017.7 ↗
3. 10.1016/j.tibs.2019.03.00510.1016/j.tibs.2019.03.005 ↗
4. 10.1126/science.abb803210.1126/science.abb8032 ↗
5. 10.1103/RevModPhys.90.03100110.1103/RevModPhys.90.031001 ↗
6. 10.1103/PhysRevLett.113.23810210.1103/PhysRevLett.113.238102 ↗
7. 10.1038/s41580-023-00673-010.1038/s41580-023-00673-0 ↗
8. 10.1021/acs.chemrev.1c0077410.1021/acs.chemrev.1c00774 ↗
9. 10.1021/acs.chemrev.1c0102310.1021/acs.chemrev.1c01023 ↗
10. 10.1016/j.str.2013.08.00110.1016/j.str.2013.08.001 ↗
11. 10.1038/s41586-023-06329-510.1038/s41586-023-06329-5 ↗
12. 10.1038/nchem.280310.1038/nchem.2803 ↗
13. 10.1021/jacs.6b0242410.1021/jacs.6b02424 ↗
14. 10.1038/nphys180310.1038/nphys1803 ↗
15. 10.1038/s41567-018-0194-910.1038/s41567-018-0194-9 ↗
16. 10.1073/pnas.100576610710.1073/pnas.1005766107 ↗
17. 10.1021/ja506820r10.1021/ja506820r ↗
18. 10.1021/jacs.7b0138010.1021/jacs.7b01380 ↗
19. 10.1002/anie.20170674010.1002/anie.201706740 ↗
20. 10.1103/PhysRevA.38.36410.1103/PhysRevA.38.364 ↗
21. 10.1007/s10955-011-0229-410.1007/s10955-011-0229-4 ↗
22. 10.1038/s41594-021-00677-410.1038/s41594-021-00677-4 ↗
23. 10.1073/pnas.150482211210.1073/pnas.1504822112 ↗
24. 10.1016/j.jmb.2018.06.01410.1016/j.jmb.2018.06.014 ↗
25. 10.1016/j.cell.2018.06.00610.1016/j.cell.2018.06.006 ↗
26. 10.1016/j.molcel.2019.09.01410.1016/j.molcel.2019.09.014 ↗
27. 10.1016/j.sbi.2017.12.00710.1016/j.sbi.2017.12.007 ↗
28. 10.1080/0010751050005244410.1080/00107510500052444 ↗
29. 10.1038/nphys355310.1038/nphys3553 ↗
30. 10.1063/1.353786810.1063/1.3537868 ↗
31. 10.1523/JNEUROSCI.21-04-01370.200110.1523/JNEUROSCI.21-04-01370.2001 ↗
32. 10.1109/FREQ.1979.20029710.1109/FREQ.1979.200297 ↗
33. 10.1038/s41565-020-00798-910.1038/s41565-020-00798-9 ↗
34. 10.1103/PhysRevLett.112.15810310.1103/PhysRevLett.112.158103 ↗
35. 10.1103/PhysRevLett.125.05800110.1103/PhysRevLett.125.058001 ↗
36. 10.1073/pnas.201382511810.1073/pnas.2013825118 ↗
37. 10.1007/s11214-015-0155-x10.1007/s11214-015-0155-x ↗
38. 10.1038/ncomms197410.1038/ncomms1974 ↗
39. 10.1038/s41467-020-17353-810.1038/s41467-020-17353-8 ↗
40. 10.1103/PhysRevLett.59.38110.1103/PhysRevLett.59.381 ↗
41. 10.1016/j.physrep.2017.11.00310.1016/j.physrep.2017.11.003 ↗
42. 10.1126/sciadv.adf717010.1126/sciadv.adf7170 ↗
43. 10.1103/PhysRevB.47.1117110.1103/PhysRevB.47.11171 ↗
44. 10.1093/oso/9780195079517.001.000110.1093/oso/9780195079517.001.0001 ↗
45. 10.1073/pnas.132261111110.1073/pnas.1322611111 ↗
46. 10.1021/acs.jpclett.1c0020810.1021/acs.jpclett.1c00208 ↗
47. 10.1021/cr400695p10.1021/cr400695p ↗
48. 10.1093/molbev/msaa25810.1093/molbev/msaa258 ↗
49. 10.1021/cn400041j10.1021/cn400041j ↗
50. 10.1073/pnas.212252311910.1073/pnas.2122523119 ↗
51. 10.1073/pnas.222018012010.1073/pnas.2220180120 ↗
52. 10.1021/acs.jpcb.9b0257510.1021/acs.jpcb.9b02575 ↗
53. 10.1073/pnas.200022311710.1073/pnas.2000223117 ↗
54. 10.1038/s41557-021-00840-w10.1038/s41557-021-00840-w ↗
55. 10.1021/ja042798i10.1021/ja042798i ↗
56. 10.1016/j.jmb.2018.06.03110.1016/j.jmb.2018.06.031 ↗
57. 10.1021/acs.biomac.0c0129210.1021/acs.biomac.0c01292 ↗
58. 10.1021/acs.jpclett.3c0164210.1021/acs.jpclett.3c01642 ↗
59. 10.1038/nmeth.120810.1038/nmeth.1208 ↗
60. 10.1146/annurev-physchem-012420-10491710.1146/annurev-physchem-012420-104917 ↗
61. 10.1016/j.bpj.2017.12.02510.1016/j.bpj.2017.12.025 ↗
62. 10.1021/jacs.0c0208810.1021/jacs.0c02088 ↗
63. 10.1021/jacsau.2c0041410.1021/jacsau.2c00414 ↗
64. 10.1093/nar/gkx46010.1093/nar/gkx460 ↗
65. 10.1016/j.cell.2006.05.04910.1016/j.cell.2006.05.049 ↗
66. 10.1021/cbmi.3c0009410.1021/cbmi.3c00094 ↗
67. 10.1146/annurev-conmatphys-031720-03291710.1146/annurev-conmatphys-031720-032917 ↗
68. 10.1242/jcs.20029510.1242/jcs.200295 ↗
69. 10.1021/acs.jpcb.0c1048910.1021/acs.jpcb.0c10489 ↗
70. 10.3389/fphy.2019.0001010.3389/fphy.2019.00010 ↗
71. 10.1021/acs.jpcb.3c0083010.1021/acs.jpcb.3c00830 ↗
72. 10.1146/annurev.bb.15.060186.00154110.1146/annurev.bb.15.060186.001541 ↗
73. 10.1186/s40659-016-0092-510.1186/s40659-016-0092-5 ↗
74. 10.1016/j.physrep.2019.10.00410.1016/j.physrep.2019.10.004 ↗
75. 10.1016/j.str.2014.03.01210.1016/j.str.2014.03.012 ↗