journal article·2025-04Open access

MaTableGPT: GPT‐Based Table Data Extractor from Materials Science Literature

Gyeong Hoon Yi, Jiwoo Choi, Hyeongyun Song, Olivia Miano, Jaewoong Choi, Kihoon Bang, Byungju Lee, Seok Su Sohn, David Buttler, Anna Hiszpanski, Sang Soo Han, Donghun Kim

Advanced Science· Volume 12· Issue 16

Abstract

Abstract Efficiently extracting data from tables in the scientific literature is pivotal for building large‐scale databases. However, the tables reported in materials science papers exist in highly diverse forms; thus, rule‐based extractions are an ineffective approach. To overcome this challenge, the study presents MaTableGPT, which is a GPT‐based table data extractor from the materials science literature. MaTableGPT features key strategies of table data representation and table splitting for better GPT comprehension and filtering hallucinated information through follow‐up questions. When applied to a vast volume of water splitting catalysis literature, MaTableGPT achieves an extraction accuracy (total F1 score) of up to 96.8%. Through comprehensive evaluations of the GPT usage cost, labeling cost, and extraction accuracy for the learning methods of zero‐shot, few‐shot, and fine‐tuning, the study presents a Pareto‐front mapping where the few‐shot learning method is found to be the most balanced solution owing to both its high extraction accuracy (total F1 score >95%) and low cost (GPT usage cost of 5.97 US dollars and labeling cost of 10 I/O paired examples). The statistical analyses conducted on the database generated by MaTableGPT revealed valuable insights into the distribution of the overpotential and elemental utilization across the reported catalysts in the water splitting literature.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Machine Learning in Materials Science · Data Quality and Management · Topic Modeling

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Computational Science Research Center Korea Institute of Science and Technology Seoul 02792 Republic of Korea

Department of Materials Science and Engineering Korea University Seoul 02841 Republic of Korea

Global Security Computing Applications Division Lawrence Livermore National Laboratory Livermore CA 94550 USA

Center for Applied Scientific Computing Lawrence Livermore National Laboratory Livermore CA 94550 USA

Materials Science Division Lawrence Livermore National Laboratory Livermore CA 94550 USA

Funding

Ministry of Science and ICT, South Korea · Lawrence Livermore National Laboratory · Korea Institute of Science and Technology

References (57)

Show source-provided references
1. 10.1002/advs.20190080810.1002/advs.201900808 ↗
2. 10.1021/acs.accounts.9b0047010.1021/acs.accounts.9b00470 ↗
3. 10.1038/s41524-017-0056-510.1038/s41524-017-0056-5 ↗
4. 10.1557/jmr.2016.8010.1557/jmr.2016.80 ↗
5. 10.1063/1.481232310.1063/1.4812323 ↗
6. 10.1007/s11837-013-0755-410.1007/s11837-013-0755-4 ↗
7. 10.1557/mrs.2018.20810.1557/mrs.2018.208 ↗
8. 10.1021/acscatal.2c0542610.1021/acscatal.2c05426 ↗
9. 10.1021/acs.jcim.6b0020710.1021/acs.jcim.6b00207 ↗
10. 10.1021/acs.jcim.1c0044610.1021/acs.jcim.1c00446 ↗
11. 10.1038/s41597-023-02089-z10.1038/s41597-023-02089-z ↗
12. 10.1039/D3TA02780E10.1039/D3TA02780E ↗
13. 10.1021/acs.jcim.9b0073410.1021/acs.jcim.9b00734 ↗
14. J.Luo Z.Li J.Wang C.‐Y.Lin inProc. of the IEEE/CVF Winter Conf. on Applications of Computer Vision (WACV) Waikoloa HI 2021.
15. H.Kato M.Nakazawa H.‐K.Yang M.Chen B.Stenger inProceedings of the IEEE/CVF Winter Conf. on Applications of Computer Vision (WACV) Waikoloa HI 2022.
16. M. Y.Hassan M.Singh inProceedings of the IEEE/CVF Winter Conf. on Applications of Computer Vision (WACV) Waikoloa Hi 2023 621.
17. 10.1038/s41467-024-45563-x10.1038/s41467-024-45563-x ↗
18. Brown T. · Adv. Neural Inf. Process. Syst. · 2020 · 33 · 1877
19. J.Achiam S.Adler S.Agarwal L.Ahmad I.Akkaya F. L.Aleman D.Almeida J.Altenschmidt S.Altman S.Anadkat (preprint) arXiv arXiv:2303.08774 v6 submitted: Mar 2023.
20. 10.1038/s43246-024-00449-910.1038/s43246-024-00449-9 ↗
21. T.Xie Y.Wan W.Huang Y.Zhou Y.Liu Q.Linghu S.Wang C.Kit C.Grazian W.Zhang (Preprint)arXiv arXiv:2304.02213 v5 submitted: Apr 2023.10.1016/j.patter.2024.100955 ↗
22. Y.Kang J.Kim (Preprint)arXiv arXiv:2308.01423 v2 submitted: Aug 2023.
23. W.Lee Y.Kang T.Bae J.Kim (Preprint)arXiv arXiv:2404.13053 v1 submitted: Mar 2024.
24. 10.1016/j.ijhydene.2023.02.04910.1016/j.ijhydene.2023.02.049 ↗
25. 10.1016/j.ijhydene.2019.03.16110.1016/j.ijhydene.2019.03.161 ↗
26. 10.1016/j.jechem.2020.05.02610.1016/j.jechem.2020.05.026 ↗
27. 10.1039/D1NR02244J10.1039/D1NR02244J ↗
28. T.Zhang F.Wu A.Katiyar K. Q.Weinberger Y.Artzi (Preprint)arXiv arXiv:2006.05987 v3 submitted: Jun 2020.
29. C.Sun X.Qiu Y.Xu X.Huang inChinese Computational Linguistics 18th China National Conf. CCL 2019 Kunming China October2019.10.1007/978-3-030-32381-3 ↗
30. 10.1002/eem2.1244110.1002/eem2.12441 ↗
31. 10.1002/adma.20200632810.1002/adma.202006328 ↗
32. 10.1021/acsenergylett.1c0024610.1021/acsenergylett.1c00246 ↗
33. 10.1002/adfm.20180329110.1002/adfm.201803291 ↗
34. 10.1021/acsomega.9b0355010.1021/acsomega.9b03550 ↗
35. 10.1021/cs300309810.1021/cs3003098 ↗
36. 10.1021/acscatal.9b0064810.1021/acscatal.9b00648 ↗
37. 10.1038/s41467-019-09666-010.1038/s41467-019-09666-0 ↗
38. 10.1038/s41563-022-01380-510.1038/s41563-022-01380-5 ↗
39. 10.1016/j.jallcom.2021.16211310.1016/j.jallcom.2021.162113 ↗
40. 10.1002/smll.20200748410.1002/smll.202007484 ↗
41. 10.1126/sciadv.abc732310.1126/sciadv.abc7323 ↗
42. 10.1126/science.aaf505010.1126/science.aaf5050 ↗
43. 10.1002/anie.20190079610.1002/anie.201900796 ↗
44. 10.1038/s41467-024-46801-y10.1038/s41467-024-46801-y ↗
45. 10.1002/adfm.20211003610.1002/adfm.202110036 ↗
46. 10.1016/j.jpowsour.2019.22737510.1016/j.jpowsour.2019.227375 ↗
47. 10.1039/D0TA10712C10.1039/D0TA10712C ↗
48. 10.1149/2.0481815jes10.1149/2.0481815jes ↗
49. 10.1021/ja106212w10.1021/ja106212w ↗
50. 10.1016/j.apsusc.2019.05.31410.1016/j.apsusc.2019.05.314 ↗
51. 10.1021/acscatal.8b0104610.1021/acscatal.8b01046 ↗
52. 10.1016/j.nanoen.2020.10551410.1016/j.nanoen.2020.105514 ↗
53. T.Joachims presented at14th ICML Nashville TN Jul 1997.
54. Kojima T. · Adv. Neural Inf. Process. Syst. · 2022 · 35
55. 10.1038/s41467-024-45914-810.1038/s41467-024-45914-8 ↗
56. X.Amatriain (Preprint)arXiv arXiv:2401.14423 v4 submitted: Jan 2024.
57. Z.Zheng O.Zhang C.Borgs J. T.Chayes O. M.Yaghi arXiv arXiv2306.112962023.