journal article·2025-01Open access

Unsupervised Learning‐Assisted Acoustic‐Driven Nano‐Lens Holography for the Ultrasensitive and Amplification‐Free Detection of Viable Bacteria

Yang Zhou, Junpeng Zhao, Junping Wen, Ziyan Wu, Yongzhen Dong, Yiping Chen

Advanced Science· Volume 12· Issue 2

Abstract

Abstract Bacterial infection is a crucial factor resulting in public health issues worldwide, often triggering epidemics and even fatalities. The accurate, rapid, and convenient detection of viable bacteria is an effective method for reducing infections and illness outbreaks. Here, an unsupervised learning–assisted and surface acoustic wave–interdigital transducer‐driven nano‐lens holography biosensing platform is developed for the ultrasensitive and amplification‐free detection of viable bacteria. The monitoring device integrated with the nano‐lens effect can achieve the holographic imaging of polystyrene microsphere probes in an ultra‐wide field of view (∽28.28 mm2), with a sensitivity limit of as low as 99 nm. A lightweight unsupervised learning hologram processing algorithm considerably reduces training time and computing hardware requirements, without requiring datasets with manual labels. By combining phage–mediated viable bacterial DNA extraction and enhanced CRISPR–Cas12a systems, this strategy successfully achieves the ultrasensitive detection of viable Salmonella in various real samples, demonstrating enhanced accuracy validated with the qPCR benchmark method. This approach has a low cost (∽$500) and is rapid (∽1 h) and highly sensitive (∽38 CFU mL−1), allowing for the amplification‐free detection of viable bacteria and emerging as a powerful tool for food safety inspection and clinical diagnosis.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Biosensors and Analytical Detection · Bacteriophages and microbial interactions · Microfluidic and Bio-sensing Technologies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

State Key Laboratory of Marine Food Processing and Safety Control Dalian Polytechnic University Dalian Liaoning 116034 China

Institute of Biopharmaceutical and Health Engineering Shenzhen International Graduate School Tsinghua University Shenzhen Guangdong 518055 China

College of Engineering Huazhong Agricultural University Wuhan Hubei 430070 China

College of Food Science and Technology Huazhong Agricultural University Wuhan Hubei 430070 China

Funding

National Natural Science Foundation of China · National Key Research and Development Program of China

References (42)

Show source-provided references
1. 10.1038/s43016-021-00229-510.1038/s43016-021-00229-5 ↗
2. 10.1039/D3CS00417A10.1039/D3CS00417A ↗
3. 10.1021/acs.accounts.1c0035510.1021/acs.accounts.1c00355 ↗
4. 10.1016/j.trac.2024.11773610.1016/j.trac.2024.117736 ↗
5. 10.1038/s41565-022-01175-410.1038/s41565-022-01175-4 ↗
6. 10.1021/acsnano.1c0249410.1021/acsnano.1c02494 ↗
7. 10.1002/anie.20201562810.1002/anie.202015628 ↗
8. 10.1002/adfm.20220787910.1002/adfm.202207879 ↗
9. 10.1016/j.cej.2024.14884510.1016/j.cej.2024.148845 ↗
10. 10.1073/pnas.231403012110.1073/pnas.2314030121 ↗
11. 10.1016/j.ccr.2024.21574510.1016/j.ccr.2024.215745 ↗
12. 10.1002/adfm.20221208110.1002/adfm.202212081 ↗
13. 10.1039/D2CS00594H10.1039/D2CS00594H ↗
14. 10.1039/D2LC00289B10.1039/D2LC00289B ↗
15. 10.1021/acssensors.0c0248110.1021/acssensors.0c02481 ↗
16. 10.1002/adfm.20210564510.1002/adfm.202105645 ↗
17. 10.1016/j.nantod.2024.10223810.1016/j.nantod.2024.102238 ↗
18. 10.1038/nprot.2012.05210.1038/nprot.2012.052 ↗
19. Zhou Y. · Anal. Chem. · 2023 · 95 · 158910.1021/acs.analchem.2c04703 ↗
20. 10.1021/acsnano.3c0294110.1021/acsnano.3c02941 ↗
21. 10.1038/s41377-019-0196-010.1038/s41377-019-0196-0 ↗
22. 10.1038/nphoton.2012.33710.1038/nphoton.2012.337 ↗
23. 10.1038/s41467-019-13802-110.1038/s41467-019-13802-1 ↗
24. 10.1021/nn502453h10.1021/nn502453h ↗
25. 10.1038/s41467-024-46069-210.1038/s41467-024-46069-2 ↗
26. 10.1002/anie.20221841210.1002/anie.202218412 ↗
27. 10.1038/s41467-023-38104-510.1038/s41467-023-38104-5 ↗
28. 10.1038/s41587-021-01179-w10.1038/s41587-021-01179-w ↗
29. 10.1007/s10462-023-10654-610.1007/s10462-023-10654-6 ↗
30. 10.1038/s41592-019-0403-110.1038/s41592-019-0403-1 ↗
31. 10.1038/s41467-023-36017-x10.1038/s41467-023-36017-x ↗
32. 10.1038/s41592-019-0458-z10.1038/s41592-019-0458-z ↗
33. 10.1016/j.jclepro.2023.13791310.1016/j.jclepro.2023.137913 ↗
34. M. M.Bronstein J.Bruna T.Cohen P.Velivckovi'c ArXiv2021 abs/2104.13478.
35. 10.1038/nmeth.208910.1038/nmeth.2089 ↗
36. Bradski G. · Dr. Dobb's j. softw. tools · 2000 · 25 · 120
37. 10.1016/j.tifs.2017.02.00610.1016/j.tifs.2017.02.006 ↗
38. 10.1111/1541-4337.1266210.1111/1541-4337.12662 ↗
39. 10.1073/pnas.120605510910.1073/pnas.1206055109 ↗
40. 10.1016/0165-2125(94)00043-510.1016/0165-2125(94)00043-5 ↗
41. 10.1038/s41467-022-35004-y10.1038/s41467-022-35004-y ↗
42. M.Abadi A.Agarwal P.Barham E.Brevdo Z.Chen C.Citro G. S.Corrado A.Davis J.Dean M.Devin S.Ghemawat I. J.Goodfellow A.Harp G.Irving M.Isard Y.Jia R.Józefowicz L.Kaiser M.Kudlur J.Levenberg D.Mané R.Monga S.Moore D. G.Murray C.Olah M.Schuster J.Shlens B.Steiner I.Sutskever K.Talwar et al. ArXiv 2016 abs/1603.04467.