Comparative metabolomic analysis of furfural stress response in Aspergillus terreus
Source abstract
Abstract
Pretreatment of lignocellulosic biomass results in the generation of a great number of inhibitors, which seriously hinder microbial growth and fermentation. Furfural, one inhibitor produced, can impede Aspergillus terreus growth and itaconic acid (IA) production. In this study, chemical mutagenesis was employed to improve the tolerance of A. terreus to furfural, with results showing significant improvement in A. terreus mutant strain growth rates, furfural degradation and reduction in IA production. Metabolomic analysis was applied to establish the underlying mechanisms of furfural tolerance in A. terreus. Differences in metabolic pathways were assessed between mutant and parental strains, when exposed to 0.5 g/L furfural, which induces significantly greater toxicity to the parental strain than the mutant strain. Results show that the higher activity of beta-alanine, glutathione and tryptophan metabolism pathways in parental strains can directly affect the cell content of NAD+, NADP+/NADPH and coenzyme A, which protect cells from furfural damage. Additionally, parental strain can protect cells against furfural toxicity by reducing lysine metabolism. This study identifies four metabolic pathways which are related to furfural tolerance in A. terreus.
Source: openaire · Quality: candidate unverified · Source record ↗
Research context
OpenAlex topics: Microbial Metabolic Engineering and Bioproduction · Biofuel production and bioconversion · Fungal and yeast genetics research
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
References (39)
Show source-provided references
1. Allen SA, Clark W, McCaffery JM, Cai Z, Lanctot A, Slininger PJ, Liu ZL, Gorsich SW (2010) Furfural induces reactive oxygen species accumulation and cellular damage in Saccharomyces cerevisiae. Biotechnol Biofuels 3:210.1186/1754-6834-3-2 ↗
2. Al-Saryi NA, Al-Hejjaj MY, van Roermund CWT, Hulmes GE, Ekal L, Payton C, Wanders RJA, Hettema EH (2017) Two NAD-linked redox shuttles maintain the peroxisomal redox balance in Saccharomyces cerevisiae. Sci Rep 7:1186810.1038/s41598-017-11942-2 ↗
3. Broeckling CD, Huhman DV, Farag MA, Smith JT, May GD, Mendes P, Dixon RA, Sumner LW (2005) Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. J Exp Bot 56:323–33610.1093/jxb/eri058 ↗
4. Crawford IP (1987) Synthesis of tryptophan from chorismate—comparative aspects. Method Enzymol 142:293–30010.1016/S0076-6879(87)42039-9 ↗
5. Deponte M (2017) The incomplete glutathione puzzle: just guessing at numbers and figures? Antioxid Redox Sign 27:1130–116110.1089/ars.2017.7123 ↗
6. Ding MZ, Wang X, Yang Y, Yuan YJ (2011) Metabolomic study of interactive effects of phenol, furfural, and acetic acid on Saccharomyces cerevisiae. OMICS 15:647–65310.1089/omi.2011.0003 ↗
7. Duhaze C, Gagneul D, Leport L, Larher FR, Bouchereau A (2003) Uracil as one of the multiple sources of beta-alanine in Limonium latifolium, a halotolerant beta-alanine betaine accumulating Plumbaginaceae. Plant Physiol Biochem 41:993–99810.1016/j.plaphy.2003.06.002 ↗
8. Hasunuma T, Sanda T, Yamada R, Yoshimura K, Ishii J, Kondo A (2011) Metabolic pathway engineering based on metabolomics confers acetic and formic acid tolerance to a recombinant xylose-fermenting strain of Saccharomyces cerevisiae. Microb Cell Fact 10:210.1186/1475-2859-10-2 ↗
9. Heer D, Heine D, Sauer U (2009) Resistance of Saccharomyces cerevisiae to high concentrations of furfural is based on nadph-dependent reduction by at least two oxireductases. Appl Environ Microb 75:7631–763810.1128/AEM.01649-09 ↗
10. Jung YH, Kim S, Yang J, Seo JH, Kim KH (2017) Intracellular metabolite profiling of Saccharomyces cerevisiae evolved under furfural. Microb Biotechnol 10:395–40410.1111/1751-7915.12465 ↗
11. Kim D, Hahn JS (2013) Roles of the Yap1 transcription factor and antioxidants in Saccharomyces cerevisiae’s tolerance to furfural and 5-hydroxymethylfurfural, which function as thiol-reactive electrophiles generating oxidative stress. Appl Environ Microb 79:5069–507710.1128/AEM.00643-13 ↗
12. Krull S, Hevekerl A, Kuenz A, Pruss U (2017) Process development of itaconic acid production by a natural wild type strain of Aspergillus terreus to reach industrially relevant final titers. Appl Microbiol Biotechnol 101:4063–407210.1007/s00253-017-8192-x ↗
13. Li BZ, Yuan YJ (2010) Transcriptome shifts in response to furfural and acetic acid in Saccharomyces cerevisiae. Appl Microbiol Biot 86:1915–192410.1007/s00253-010-2518-2 ↗
14. Loow YL, Wu TY, Jahim JM, Mohammad AW, Teoh WH (2016) Typical conversion of lignocellulosic biomass into reducing sugars using dilute acid hydrolysis and alkaline pretreatment. Cellulose 23:1491–152010.1007/s10570-016-0936-8 ↗
15. Matsuda F, Shirai T, Ishii J, Kondo A (2013) Regulation of central carbon metabolism in Saccharomyces cerevisiae by metabolic inhibitors. J Biosci Bioeng 116:59–6410.1016/j.jbiosc.2013.01.018 ↗
16. Min DY, Wei L, Zhao T, Li MF, Jia Z, Wan GC, Zhang QT, Qin CR, Wang SF (2018) Combination of hydrothermal pretreatment and sodium hydroxide post-treatment applied on wheat straw for enhancing its enzymatic hydrolysis. Cellulose 25:1197–120610.1007/s10570-017-1644-8 ↗
17. Miozzari G, Niederberger P, Hutter R (1978) Tryptophan biosynthesis in Saccharomyces-Cerevisiae—control of flux through pathway. J Bacteriol 134:48–5910.1128/JB.134.1.48-59.1978 ↗
18. Mondala AH (2015) Direct fungal fermentation of lignocellulosic biomass into itaconic, fumaric, and malic acids: current and future prospects. J Ind Microbiol Biotechnol 42:487–50610.1007/s10295-014-1575-4 ↗
19. Moon J, Liu ZL (2012) Engineered NADH-dependent GRE2 from Saccharomyces cerevisiae by directed enzyme evolution enhances HMF reduction using additional cofactor NADPH. Enzyme Microb Tech 50:115–12010.1016/j.enzmictec.2011.10.007 ↗
20. Nugroho RH, Yoshikawa K, Shimizu H (2015) Metabolomic analysis of acid stress response in Saccharomyces cerevisiae. J Biosci Bioeng 120:396–40410.1016/j.jbiosc.2015.02.011 ↗
21. Ohashi K, Chaleckis R, Takaine M, Wheelock CE, Yoshida S (2017) Kynurenine aminotransferase activity of Aro8/Aro9 engage tryptophan degradation by producing kynurenic acid in Saccharomyces cerevisiae. Sci Rep 7:1218010.1038/s41598-017-12392-6 ↗
22. Oldiges M, Lutz S, Pflug S, Schroer K, Stein N, Wiendahl C (2007) Metabolomics: current state and evolving methodologies and tools. Appl Microbiol Biot 76:495–51110.1007/s00253-007-1029-2 ↗
23. Park SE, Koo HM, Park YK, Park SM, Park JC, Lee OK, Park YC, Seo JH (2011) Expression of aldehyde dehydrogenase 6 reduces inhibitory effect of furan derivatives on cell growth and ethanol production in Saccharomyces cerevisiae. Bioresour Technol 102:6033–603810.1016/j.biortech.2011.02.101 ↗
24. Pienkos PT, Zhang M (2009) Role of pretreatment and conditioning processes on toxicity of lignocellulosic biomass hydrolysates. Cellulose 16:743–76210.1007/s10570-009-9309-x ↗
25. Qiu ZQ, Deng ZJ, Tan HM, Zhou SN, Cao LX (2015) Engineering the robustness of Saccharomyces cerevisiae by introducing bifunctional glutathione synthase gene. J Ind Microbiol Biot 42:537–54210.1007/s10295-014-1573-6 ↗
26. Saha BC (2017) Emerging biotechnologies for production of itaconic acid and its applications as a platform chemical. J Ind Microbiol Biotechnol 44:303–31510.1007/s10295-016-1878-8 ↗
27. Schmacht M, Lorenz E, Senz M (2017) Microbial production of glutathione. World J Microbiol Biotechnol 33:10610.1007/s11274-017-2277-7 ↗
28. Shen Y, Zhao LZ, Li YR, Zhang L, Shi GY (2014) Synthesis of beta-alanine from L-aspartate using L-aspartate-alpha-decarboxylase from Corynebacterium glutamicum. Biotechnol Lett 36:1681–168610.1007/s10529-014-1527-0 ↗
29. Wang X, Miller EN, Yomano LP, Zhang X, Shanmugam KT, Ingram LO (2011) Increased furfural tolerance due to overexpression of nadh-dependent oxidoreductase FucO in Escherichia coli strains engineered for the production of ethanol and lactate. Appl Environ Microb 77:5132–514010.1128/AEM.05008-11 ↗
30. Wang X, Li BZ, Ding MZ, Zhang WW, Yuan YJ (2013) Metabolomic analysis reveals key metabolites related to the rapid adaptation of Saccharomyce cerevisiae to multiple inhibitors of furfural, acetic acid, and phenol. OMICS 17:150–15910.1089/omi.2012.0093 ↗
31. Wang X, Jin MJ, Balan V, Jones AD, Li X, Li BZ, Dale BE, Yuan YJ (2014) Comparative metabolic profiling revealed limitations in xylose-fermenting yeast during Co-fermentation of glucose and xylose in the presence of inhibitors. Biotechnol Bioeng 111:152–16410.1002/bit.24992 ↗
32. Wang X, Bai X, Chen DF, Chen FZ, Li BZ, Yuan YJ (2015) Increasing proline and myo-inositol improves tolerance of Saccharomyces cerevisiae to the mixture of multiple lignocellulose-derived inhibitors. Biotechnol Biofuels 8:14210.1186/s13068-015-0329-5 ↗
33. Wei H, Tucker MP, Baker JO, Harris M, Luo YH, Xu Q, Himmel ME, Ding SY (2012) Tracking dynamics of plant biomass composting by changes in substrate structure, microbial community, and enzyme activity. Biotechnol Biofuels 5:2010.1186/1754-6834-5-20 ↗
34. White WH, Gunyuzlu PL, Toyn JH (2001) Saccharomyces cerevisiae is capable of de novo pantothenic acid biosynthesis involving a novel pathway of beta-alanine production from spermine. J Biol Chem 276:10794–1080010.1074/jbc.M009804200 ↗
35. Wolfner M, Yep D, Messenguy F, Fink GR (1975) Integration of amino-acid biosynthesis into cell-cycle of Saccharomyces-Cerevisiae. J Mol Biol 96:273–29010.1016/0022-2836(75)90348-4 ↗
36. Wu XF, Liu Q, Deng YD, Li JH, Chen XJ, Gu YZ, Lv XJ, Zheng Z, Jiang ST, Li XJ (2017) Production of itaconic acid by biotransformation of wheat bran hydrolysate with Aspergillus terreus CICC40205 mutant. Bioresour Technol 241:25–3410.1016/j.biortech.2017.05.080 ↗
37. Xu HY, Andi B, Qian JH, West AH, Cook PF (2006) The alpha-aminoadipate pathway for lysine biosynthesis in fungi. Cell Biochem Biophys 46:43–6410.1385/CBB:46:1:43 ↗
38. Zabriskie TM, Jackson MD (2000) Lysine biosynthesis and metabolism in fungi. Nat Prod Rep 17:85–9710.1039/a801345d ↗
39. Zhai QL, Li FL, Wang F, Xu JM, Jiang JC, Cai ZS (2018) Liquefaction of poplar biomass for value-added platform chemicals. Cellulose 25:4663–467510.1007/s10570-018-1872-6 ↗