What crystals of small analogs are trying to tell us about cellulose structure
Source abstract
Abstract
The molecular geometries from crystal structures of 23 small molecules such as cellobiose were reviewed and extrapolated to give model cellulose chains. Within a given model, all monosaccharide units and their linkages are identical so the models are regular helices. Despite fairly large ranges for the glycosidic linkage torsion angles Φ and ψ, 29° and 57°, respectively, there is little variation in the n and h parameters of the model helices. They are extended, with h values (the advance per residue along the helix axis) of 5.04–5.27 A. Some models were slightly right-handed, with n values up to 2.12 residues per helix turn. Left-handed models were in the majority, and their n values were as large as −2.91. These results are consistent with known structures of cellulose and its derivatives. An exception comes from a heavily derivatized cellobiose molecule. It yields right-handed helices with n≈ 4.5 and h≈ 3 A. Because one half turn of this helix reverses the direction of the chain in a compact region, the linkage geometry is a model for chain-folding. Other derivatives that are unable to form the O3⋯O5′ hydrogen bond gave left-handed helices. The puckering of the glucose rings was also surveyed. A number of rings in small molecule structures are puckered to a degree that is similar to the puckering determined for methyl cellotrioside, cellotetraose, cellulose Iβ and cellulose II.
Source: openaire · Quality: candidate unverified · Source record ↗
Research context
OpenAlex topics: Advanced Cellulose Research Studies · Carbohydrate Chemistry and Synthesis · Lignin and Wood Chemistry
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
References (63)
Show source-provided references
1. Alexander L.E. 1969. X-Ray Diffraction Methods in Polymer Science. Wiley-Interscience, New York, p. 360.
2. Allen F.H. 2002. The Cambridge Structural Database: a quarter of a million crystal structures and rising. Acta Crystallogr. Sect. B 58: 380–388.10.1107/S0108768102003890 ↗
3. Bruhn C., Arendt Y. and Steinborn D. 2001. Crystal structure of O1,O2,O3,O6-tetraacetyl-O4-[tetra-O-acetyl-ß-D-glucopyranosyl]-a-D-glucopyranose(octa-O-acetyl-a-D-cellobiose) C28H38O19. Z. Kristallogr. New Cryst. Struct. 216: 587–588.
4. Bugg C.E. 1973. Calcium binding to carbohydrates. Crystal structure of a hydrated calcium bromide complex of lactose. J. Am. Chem. Soc. 95: 908–913.10.1021/ja00784a046 ↗
5. Burden C., Mackie W. and Sheldrick B. 1986. 4-O-ß-D-galactopyranosyl-a-D-mannopyranose hemiethanol dihydrate. Acta Crystallogr. Sect. C (Cryst. Struct. Commun.) 42: 177–179.10.1107/S0108270186096865 ↗
6. Chu S.S.C. and Jeffrey G.A. 1968. The refinement of the crystal structures of ß-D-glucose and cellobiose. Acta Crystallogr. Sect. B 24: 830–838.10.1107/S0567740868003250 ↗
7. Cook W.J. and Bugg C.E. 1973. A lactose-calcium chloride heptahydrate complex. Acta Crystallogr. Sect. B 29: 907–909.10.1107/S0567740873003535 ↗
8. Cremer D. and Pople J.A. 1975. A general definition of ring puckering coordinates. J. Am. Chem. Soc. 97: 1354–1358.10.1021/ja00839a011 ↗
9. Dowd M.K., French A.D. and Reilly P.J. 1994. Modeling of aldopyranosyl ring puckering with MM3(92). Carbohydr. Res. 264: 1–19.10.1016/0008-6215(94)00185-5 ↗
10. Engelsen S. and Rasmussen K.J. 1997. ß-Lactose in the view of a CFF-optimized force field. J. Carbohydr. Chem. 16: 773–788.10.1080/07328309708006540 ↗
11. Ernst A. and Vasella A. 1996. Oligosaccharide analogs of polysaccharides. Part 8. Orthogonally protected cellobiosederived dialkynes. A convenient method for the regioselective bromo-and protodegermylation of trimethylgermyl-and trimethylsilyl-protected dialkynes. Helv. Chim. Acta 79: 1279–1294.10.1002/hlca.19960790505 ↗
12. French A.D., Murphy V.G. and Kainuma K. 1978. Accessible conformations of amylose: a computer modeling study. J. Jpn. Soc. Starch Sci. 25: 171–176.10.5458/jag1972.25.171 ↗
13. French A.D. 1979. Allowed and preferred shapes of amylose. Bakers Digest 53: 39–46, 54.
14. French A.D. and French W.A. 1980. N-H mapping for polymers. ACS Symp. Ser. 141: 239–250.10.1021/bk-1980-0141.ch014 ↗
15. French A.D. 1983. Flexibility of cellulose and related polysaccharides. In: Proc. TAPPI International Dissolving and Specialty Pulps Conference, TAPPI, Boston, MA, pp. 229–232.
16. French A.D. 1984. Conformational accessibility of some simple polyglucosides. ACS Symp. Ser. 260: 43–60.10.1021/bk-1984-0260.ch003 ↗
17. French A.D., Rowland R.S. and Allinger N.L. 1990. Modeling of glucopyranose, the flexible monomer of amylose. ACS Symp. Ser. 430: 120–140 (our more recent survey (unpublished) shows a range of 0.9 Å for a-glucose).10.1021/bk-1990-0430.ch007 ↗
18. French A.D. and Dowd M.K. 1993. Exploration of disaccharide conformations by molecular mechanics. J. Mol. Struct. (Theochem) 286: 183–201.10.1016/0166-1280(93)87162-7 ↗
19. French A.D., Kelterer A.-M., Johnson G.P., Dowd M.K. and Cramer C.J. 2000. Constructing and evaluating energy surfaces of crystalline disaccharides. J. Mol. Graph. Model. 18: 95–107.10.1016/S1093-3263(00)00041-3 ↗
20. French A.D., Johnson G.P., Kelterer A.-M., Dowd M.K. and Cramer C.J. 2001. QM/MM distortion energies in di-and oligosaccharides complexed with proteins. Int. J. Quantum Chem. 84: 416–425.10.1002/qua.1111 ↗
21. French A.D., Johnson G.P., Peralta-Inga Z., Stevens E.D. and Dowd M.K. 2002. Implications of the crystal structure of NaI-cellobiose and a hybrid potential energy surface for cellulose structures. Polymer Preprints 43: 195–196.
22. Gessler K., Krauss N., Steiner T., Betzel C., Sarko A. and Saenger W. 1995. ß-D-Cellotetraose hemihydrate as a structural model for cellulose II. An X-ray diffraction study. J. Am. Chem. Soc. 117: 11397–11406.10.1021/ja00151a003 ↗
23. Ham J.T. and Williams D.G. 1970. Crystal and molecular structure of methyl ß-cellobioside-methanol. Acta Crystallogr. Sect. B 26: 1373–1383.10.1107/S0567740870004132 ↗
24. Hess K. and Trogus C. 1931. Zur Kenntnis der Faserperiode bei Cellulosederivaten. Röntgenographische Untersuchungen an Cellulosederivaten X. Z. Physikal. Chem. Bodenstein-Festband 11: 385–391.10.1515/zpch-1931-s143 ↗
25. Hirotsu K. and Shimada A. 1974. Crystal and molecular structure of ß-lactose. Bull. Chem. Soc. Jpn. 47: 1872–1879.10.1246/bcsj.47.1872 ↗
26. IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN) 1981. Symbols for Specifying the Conformation of Polysaccharide Chains. Eur. J. Biochem., 1983, 131: 5–7; Pure Appl. Chem., 1983, 55: 1269-1272; and in Biochemical Nomenclature and Related Documents, 2nd edn, Portland Press, London, 1992, pp. 177-179.
27. Iwata T., Okamura K., Azuma J. and Tanaka F. 1996. Molecular and crystal structure of cellulose acetate dipropanoate (CADP, 6-O-acetyl-2,3-O-propanoyl cellulose). Cellulose 3: 107–124.10.1007/BF02228794 ↗
28. Jeffrey G.A. and Yates J.H. 1979. Stereographic representation of the Cremer-Pople ring-puckering parameters for pyranoid rings. Carbohydr. Res. 74: 319–322.10.1016/S0008-6215(00)84786-2 ↗
29. Koell P., Petrusova M., Petrus L., Zimmer B., Morf M. and Kopf J. 1993. Crystal and molecular structures of ß-cellobiosylnitromethane and of ß-maltosylnitromethane heptaacetate. Carbohydr. Res. 248: 37–43.10.1016/0008-6215(93)84114-L ↗
30. Kondo T., Togawa E. and Brown R.M. Jr. 2001. Nematic ordered cellulose. A concept of glucan chain association. Biomacromolecules 2: 1324–1330.10.1021/bm0101318 ↗
31. Lakshmanan T., Sriram D. and Loganathan D. 2001. ß-1-Acetamido-4-O-ß-D-galactopyranosyl-D-glucopyranose dihydrate. Acta Crystallogr. Sect. C (Cryst. Struct. Commun.) 57: 825–826.10.1107/S0108270101004796 ↗
32. Langan P., Nishiyama Y. and Chanzy H. 1999. A revised structure and hydrogen-bonding system in cellulose II from a neutron fiber diffraction analysis. J. Am. Chem. Soc. 121: 9940–9946.10.1021/ja9916254 ↗
33. Langan P., Nishiyama Y. and Chanzy H. 2001. X-Ray structure of mercerized cellulose II at I Å resolution. Biomacromolecules 2: 410–416.10.1021/bm005612q ↗
34. Leung F., Chanzy H.D., Perez S. and Marchessault R.H. 1976. Crystal structure of ß-D-acetyl cellobiose. Can. J. Chem. 54: 1365–1371.10.1139/v76-195 ↗
35. Longchambon F., Ohanessian J., Gillier-Pandraud H., Duchet D., Jacquinet J.C. and Sinay P. 1981. Structure of N-acetyllactosamine (2-acetamido-2-desoxy-4-O-ß-D-galactopyranosyl-a-D-glucopyranose). Acta Crystallogr. Sect. B 37: 601–607.10.1107/S0567740881003658 ↗
36. Meader D., Atkins E.D.T. and Happey F. 1978. Cellulose trinitrate. Molecular conformation and packing considerations. Polymer 19: 1371–1374.10.1016/0032-3861(78)90086-1 ↗
37. Mendonca S., Johnson G.P., French A.D. and Laine R.A. 2002. Conformational analyses of native and permethylated disaccharides. J. Phys. Chem. A 106: 4115–4124.10.1021/jp013290u ↗
38. Mo F. and Jensen L.H. 1978. The crystal structure of a ß-(1!4) linked disaccharide, a-N,N'-diacetylchitobiose monohydrate. Acta Crystallogr. Sect. B 34: 1562–1569.10.1107/S0567740878006081 ↗
39. Mo F. 1979. On the conformational variability of the N-acetylglucosamine ß-(1!4) linked dimer. Crystal and molecular structure of ß-N,N'-diacetylchitobiose trihydrate. Acta Chem. Scand. Ser. A 33: 207–218.10.3891/acta.chem.scand.33a-0207 ↗
40. Nikitin A.V., Andrianov V.I., Myasnikova R.M., Firgang S.I., Usov A.I., Sopin V.F. and Pertsin A.I. 1986. Crystal and molecular structure of ß-methylcellobioside heptanitrate. Kristallografiya 31: 676–681.
41. Nikitin A.V., Shibanova T.A., Firgang S.I., Usov A.I., Sopin V.F. and Myasnikova R.M. 1987. Crystal and molecular structure of methyl-ß-cellobioside 6,6'-dinitrate. Kristallografiya 32: 896–900.
42. Nishiyama Y., Langan P. and Chanzy H. 2002. Crystal structure and hydrogen-bonding system in cellulose Iß from synchrotron X-ray and neutron fiber diffraction. J. Am. Chem. Soc. 124: 9074–9082.10.1021/ja0257319 ↗
43. Noordik J.H., Beurskens P.T., Bennema P., Visser R.A. and Gould R.O. 1984. Crystal structure, polarity and morphology of 4-O-ß-D-galactopyranosyl-α-D-glucopyranose monohydrate (a-lactose monohydrate): a redetermination. Z. Kristallogr. 168: 59–65.10.1524/zkri.1984.168.1-4.59 ↗
44. Olmstead M.M., Hu M., Kurth M.J., Krochta J.M. and Hsieh Y.-L. 1997. Lactosylurea dihydrate. Acta Crystallogr. Sect. C (Cryst. Struct. Commun.) 53: 915–916.10.1107/S0108270197002849 ↗
45. Peralta-Inga Z., Johnson G.P., Dowd M.K., Rendleman J.A., Stevens E.D. and French A.D. 2002. The crystal structure of the a-cellobiose·2 NaI·2 H2O complex in the context of related structures and conformational analysis. Carbohydr. Res. 337: 851–861.10.1016/S0008-6215(02)00041-1 ↗
46. Perez S., Imberty A., Engelsen S., Gruza J., Mazeau K., Jimenez-Barbero J. et al. 1998. Acomparison and chemometric analysis of several molecular mechanics force fields and parameter sets applied to carbohydrates. Carbohydr. Res. 314: 141–155.10.1016/S0008-6215(98)00305-X ↗
47. Perez S. and Brisse F. 1977. The crystal and molecular structure of a trisaccharide, ß-cellotriose undecaacetate: 1,2,3,6-tetra-O-acetyl-4-O-[2,3,6-tri-O-acetyl-4-O-(2,3,4,6-tetra-O-acetyl-ß-D-glucopyranosyl)-ß-D-glucopyranosyl]-ß-D-glucopyranose. Acta Crystallogr. Sect. B 33: 2578–2584.10.1107/S0567740877008942 ↗
48. Ramakrishnan C. and Ramachandran G.N. 1965. Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformation for a pair of peptide units. Biophys. J. 5: 909–933.10.1016/S0006-3495(65)86759-5 ↗
49. Raymond S., Henrissat B., Qui D.T., Kvick A. and Chanzy H. 1995. The crystal structure of methyl ß-cellotrioside monohydrate 0.25 ethanolate and its relationship to cellulose II. Carbohydr. Res. 277: 209–229.10.1016/0008-6215(95)00219-J ↗
50. Rees D.A. and Skerrett R.J. 1968. Conformational analysis of cellobiose, cellulose and xylan. Carbohydr. Res. 7: 334–348.10.1016/S0008-6215(00)81206-9 ↗
51. Rencurosi A., Röhrling J., Pauli J., Potthast A., Jäger C., Pérez S., Kosma P. and Imberty A. 2002. Polymorphism in the crystal structure of the cellulose fragment analogue methyl 4-O-methyl-ß-D-glucopyranosyl-(1-4)-ß-D-glucopyranoside. Angewandte Chem. Int. Ed. Engl. 41: 4277–4281.10.1002/1521-3773(20021115)41:22<4277::AID-ANIE4277>3.0.CO;2-I ↗
52. Shimanouchi T. and Mizushima S.-I. 1955. On the helical configuration of a polymer chain. J. Chem. Phys. 33: 707–711.10.1063/1.1742083 ↗
53. Shuto Y., Okamura K., Azuma J., Tanaka F. and Chanzy H. 1990. X-ray and electron diffraction study of some cellulose derivatives. In: Kennedy J.F., Phillips G.O. and Williams P.A. (eds), Cellulose. Ellis Horwood, Chichester, UK, pp. 283–288.
54. Steinmeier H. and Zugenmaier P. 1987. “Homogeneous” and “heterogeneous” cellulose triesters and a cellulose triurethane: Synthesis and structural investigations of the crystalline state. Carbohydr. Res. 164: 97–105.10.1016/0008-6215(87)80122-2 ↗
55. Stenutz R., Shang M. and Serianni A.S. 1999. Methyl β-lactoside (methyl 4-O-ß-D-galactopyranosyl-ß-D-glucopyranoside) methanol solvate. Acta Crystallogr. Sect. C (Cryst. Struct. Commun.) 55: 1719–1721.10.1107/S0108270199007994 ↗
56. Strati G.L., Willett J.L. and Momany F.A. 2002. Ab initio computational study of ß-cellobiose conformers using B3LYP/6-311++G**. Carbohydr. Res. 337: 1833–1849.10.1016/S0008-6215(02)00267-7 ↗
57. Sundararajan P.R. and Marchessault R.H. 1972. Conformational terminology for crystalline cellulose. Can. J. Chem. 50: 792–794.10.1139/v72-123 ↗
58. Taga T., Sumiya S., Osaki K., Utamura T. and Koizumi K. 1981. Structure of 1,2,3-tri-O-acetyl-4-O-(2,3,4,6-tetra-O-acetyl-ß-D-glucopyranosyl)-6-O-triphenylmethyl-ß-D-glucopyranose(6'-O-trityl-a-cellobiose heptaacetate). Acta Crystallogr. Sect. B 37: 963–966.10.1107/S0567740881004779 ↗
59. Whitaker P.M., Nieduszynski I.A. and Atkins E.D.T. 1974. Structural aspects of soda-cellulose II. Polymer 15: 125–127.10.1016/0032-3861(74)90015-9 ↗
60. Xia J., Srikrishnan T., Alderfer J.L., Jain R.K., Piskorz C.F. and Matta K.L. 2000. Chemical synthesis of sulfated oligosaccharides with a ß-D-Gal-(1,3)-[ß-D-Gal-(1,4)-(ß-L-Fuc-(1,3)-ß-D-GlcNAc-(1,6)]-a-D-GalNAc sequence. Carbohydr. Res. 329: 561–577.10.1016/S0008-6215(00)00211-1 ↗
61. Zugenmaier P. 1983. Structural investigations on cellulose derivatives. J. Appl. Polym. Sci: Appl. Polym. Symp. 37: 223–238.
62. Zugenmaier P. 1986. Structural investigations on some cellulose derivatives in the crystalline and liquid crystalline state. In: Young R.A. and Rowell R.M. (eds), Cellulose: Structure, Modification and Hydrolysis. John Wiley and Sons, New York, pp. 221–245.
63. Zugenmaier P. 2001. Conformation and packing of various crystalline cellulose fibers. Prog. Polym. Sci. 26: 1341–1417.10.1016/S0079-6700(01)00019-3 ↗