journal article·2004-03

What crystals of small analogs are trying to tell us about cellulose structure

Alfred D. French, Glenn P. Johnson

Cellulose· Volume 11· Issue 1
Publisher page

Abstract

The molecular geometries from crystal structures of 23 small molecules such as cellobiose were reviewed and extrapolated to give model cellulose chains. Within a given model, all monosaccharide units and their linkages are identical so the models are regular helices. Despite fairly large ranges for the glycosidic linkage torsion angles Φ and ψ, 29° and 57°, respectively, there is little variation in the n and h parameters of the model helices. They are extended, with h values (the advance per residue along the helix axis) of 5.04–5.27 A. Some models were slightly right-handed, with n values up to 2.12 residues per helix turn. Left-handed models were in the majority, and their n values were as large as −2.91. These results are consistent with known structures of cellulose and its derivatives. An exception comes from a heavily derivatized cellobiose molecule. It yields right-handed helices with n≈ 4.5 and h≈ 3 A. Because one half turn of this helix reverses the direction of the chain in a compact region, the linkage geometry is a model for chain-folding. Other derivatives that are unable to form the O3⋯O5′ hydrogen bond gave left-handed helices. The puckering of the glucose rings was also surveyed. A number of rings in small molecule structures are puckered to a degree that is similar to the puckering determined for methyl cellotrioside, cellotetraose, cellulose Iβ and cellulose II.
Source: openaire · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Advanced Cellulose Research Studies · Carbohydrate Chemistry and Synthesis · Lignin and Wood Chemistry

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (63)

Show source-provided references
1. Alexander L.E. 1969. X-Ray Diffraction Methods in Polymer Science. Wiley-Interscience, New York, p. 360.
2. Allen F.H. 2002. The Cambridge Structural Database: a quarter of a million crystal structures and rising. Acta Crystallogr. Sect. B 58: 380–388.10.1107/S0108768102003890 ↗
3. Bruhn C., Arendt Y. and Steinborn D. 2001. Crystal structure of O1,O2,O3,O6-tetraacetyl-O4-[tetra-O-acetyl-ß-D-glucopyranosyl]-a-D-glucopyranose(octa-O-acetyl-a-D-cellobiose) C28H38O19. Z. Kristallogr. New Cryst. Struct. 216: 587–588.
4. Bugg C.E. 1973. Calcium binding to carbohydrates. Crystal structure of a hydrated calcium bromide complex of lactose. J. Am. Chem. Soc. 95: 908–913.10.1021/ja00784a046 ↗
5. Burden C., Mackie W. and Sheldrick B. 1986. 4-O-ß-D-galactopyranosyl-a-D-mannopyranose hemiethanol dihydrate. Acta Crystallogr. Sect. C (Cryst. Struct. Commun.) 42: 177–179.10.1107/S0108270186096865 ↗
6. Chu S.S.C. and Jeffrey G.A. 1968. The refinement of the crystal structures of ß-D-glucose and cellobiose. Acta Crystallogr. Sect. B 24: 830–838.10.1107/S0567740868003250 ↗
7. Cook W.J. and Bugg C.E. 1973. A lactose-calcium chloride heptahydrate complex. Acta Crystallogr. Sect. B 29: 907–909.10.1107/S0567740873003535 ↗
8. Cremer D. and Pople J.A. 1975. A general definition of ring puckering coordinates. J. Am. Chem. Soc. 97: 1354–1358.10.1021/ja00839a011 ↗
9. Dowd M.K., French A.D. and Reilly P.J. 1994. Modeling of aldopyranosyl ring puckering with MM3(92). Carbohydr. Res. 264: 1–19.10.1016/0008-6215(94)00185-5 ↗
10. Engelsen S. and Rasmussen K.J. 1997. ß-Lactose in the view of a CFF-optimized force field. J. Carbohydr. Chem. 16: 773–788.10.1080/07328309708006540 ↗
11. Ernst A. and Vasella A. 1996. Oligosaccharide analogs of polysaccharides. Part 8. Orthogonally protected cellobiosederived dialkynes. A convenient method for the regioselective bromo-and protodegermylation of trimethylgermyl-and trimethylsilyl-protected dialkynes. Helv. Chim. Acta 79: 1279–1294.10.1002/hlca.19960790505 ↗
12. French A.D., Murphy V.G. and Kainuma K. 1978. Accessible conformations of amylose: a computer modeling study. J. Jpn. Soc. Starch Sci. 25: 171–176.10.5458/jag1972.25.171 ↗
13. French A.D. 1979. Allowed and preferred shapes of amylose. Bakers Digest 53: 39–46, 54.
14. French A.D. and French W.A. 1980. N-H mapping for polymers. ACS Symp. Ser. 141: 239–250.10.1021/bk-1980-0141.ch014 ↗
15. French A.D. 1983. Flexibility of cellulose and related polysaccharides. In: Proc. TAPPI International Dissolving and Specialty Pulps Conference, TAPPI, Boston, MA, pp. 229–232.
16. French A.D. 1984. Conformational accessibility of some simple polyglucosides. ACS Symp. Ser. 260: 43–60.10.1021/bk-1984-0260.ch003 ↗
17. French A.D., Rowland R.S. and Allinger N.L. 1990. Modeling of glucopyranose, the flexible monomer of amylose. ACS Symp. Ser. 430: 120–140 (our more recent survey (unpublished) shows a range of 0.9 Å for a-glucose).10.1021/bk-1990-0430.ch007 ↗
18. French A.D. and Dowd M.K. 1993. Exploration of disaccharide conformations by molecular mechanics. J. Mol. Struct. (Theochem) 286: 183–201.10.1016/0166-1280(93)87162-7 ↗
19. French A.D., Kelterer A.-M., Johnson G.P., Dowd M.K. and Cramer C.J. 2000. Constructing and evaluating energy surfaces of crystalline disaccharides. J. Mol. Graph. Model. 18: 95–107.10.1016/S1093-3263(00)00041-3 ↗
20. French A.D., Johnson G.P., Kelterer A.-M., Dowd M.K. and Cramer C.J. 2001. QM/MM distortion energies in di-and oligosaccharides complexed with proteins. Int. J. Quantum Chem. 84: 416–425.10.1002/qua.1111 ↗
21. French A.D., Johnson G.P., Peralta-Inga Z., Stevens E.D. and Dowd M.K. 2002. Implications of the crystal structure of NaI-cellobiose and a hybrid potential energy surface for cellulose structures. Polymer Preprints 43: 195–196.
22. Gessler K., Krauss N., Steiner T., Betzel C., Sarko A. and Saenger W. 1995. ß-D-Cellotetraose hemihydrate as a structural model for cellulose II. An X-ray diffraction study. J. Am. Chem. Soc. 117: 11397–11406.10.1021/ja00151a003 ↗
23. Ham J.T. and Williams D.G. 1970. Crystal and molecular structure of methyl ß-cellobioside-methanol. Acta Crystallogr. Sect. B 26: 1373–1383.10.1107/S0567740870004132 ↗
24. Hess K. and Trogus C. 1931. Zur Kenntnis der Faserperiode bei Cellulosederivaten. Röntgenographische Untersuchungen an Cellulosederivaten X. Z. Physikal. Chem. Bodenstein-Festband 11: 385–391.10.1515/zpch-1931-s143 ↗
25. Hirotsu K. and Shimada A. 1974. Crystal and molecular structure of ß-lactose. Bull. Chem. Soc. Jpn. 47: 1872–1879.10.1246/bcsj.47.1872 ↗
26. IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN) 1981. Symbols for Specifying the Conformation of Polysaccharide Chains. Eur. J. Biochem., 1983, 131: 5–7; Pure Appl. Chem., 1983, 55: 1269-1272; and in Biochemical Nomenclature and Related Documents, 2nd edn, Portland Press, London, 1992, pp. 177-179.
27. Iwata T., Okamura K., Azuma J. and Tanaka F. 1996. Molecular and crystal structure of cellulose acetate dipropanoate (CADP, 6-O-acetyl-2,3-O-propanoyl cellulose). Cellulose 3: 107–124.10.1007/BF02228794 ↗
28. Jeffrey G.A. and Yates J.H. 1979. Stereographic representation of the Cremer-Pople ring-puckering parameters for pyranoid rings. Carbohydr. Res. 74: 319–322.10.1016/S0008-6215(00)84786-2 ↗
29. Koell P., Petrusova M., Petrus L., Zimmer B., Morf M. and Kopf J. 1993. Crystal and molecular structures of ß-cellobiosylnitromethane and of ß-maltosylnitromethane heptaacetate. Carbohydr. Res. 248: 37–43.10.1016/0008-6215(93)84114-L ↗
30. Kondo T., Togawa E. and Brown R.M. Jr. 2001. Nematic ordered cellulose. A concept of glucan chain association. Biomacromolecules 2: 1324–1330.10.1021/bm0101318 ↗
31. Lakshmanan T., Sriram D. and Loganathan D. 2001. ß-1-Acetamido-4-O-ß-D-galactopyranosyl-D-glucopyranose dihydrate. Acta Crystallogr. Sect. C (Cryst. Struct. Commun.) 57: 825–826.10.1107/S0108270101004796 ↗
32. Langan P., Nishiyama Y. and Chanzy H. 1999. A revised structure and hydrogen-bonding system in cellulose II from a neutron fiber diffraction analysis. J. Am. Chem. Soc. 121: 9940–9946.10.1021/ja9916254 ↗
33. Langan P., Nishiyama Y. and Chanzy H. 2001. X-Ray structure of mercerized cellulose II at I Å resolution. Biomacromolecules 2: 410–416.10.1021/bm005612q ↗
34. Leung F., Chanzy H.D., Perez S. and Marchessault R.H. 1976. Crystal structure of ß-D-acetyl cellobiose. Can. J. Chem. 54: 1365–1371.10.1139/v76-195 ↗
35. Longchambon F., Ohanessian J., Gillier-Pandraud H., Duchet D., Jacquinet J.C. and Sinay P. 1981. Structure of N-acetyllactosamine (2-acetamido-2-desoxy-4-O-ß-D-galactopyranosyl-a-D-glucopyranose). Acta Crystallogr. Sect. B 37: 601–607.10.1107/S0567740881003658 ↗
36. Meader D., Atkins E.D.T. and Happey F. 1978. Cellulose trinitrate. Molecular conformation and packing considerations. Polymer 19: 1371–1374.10.1016/0032-3861(78)90086-1 ↗
37. Mendonca S., Johnson G.P., French A.D. and Laine R.A. 2002. Conformational analyses of native and permethylated disaccharides. J. Phys. Chem. A 106: 4115–4124.10.1021/jp013290u ↗
38. Mo F. and Jensen L.H. 1978. The crystal structure of a ß-(1!4) linked disaccharide, a-N,N'-diacetylchitobiose monohydrate. Acta Crystallogr. Sect. B 34: 1562–1569.10.1107/S0567740878006081 ↗
39. Mo F. 1979. On the conformational variability of the N-acetylglucosamine ß-(1!4) linked dimer. Crystal and molecular structure of ß-N,N'-diacetylchitobiose trihydrate. Acta Chem. Scand. Ser. A 33: 207–218.10.3891/acta.chem.scand.33a-0207 ↗
40. Nikitin A.V., Andrianov V.I., Myasnikova R.M., Firgang S.I., Usov A.I., Sopin V.F. and Pertsin A.I. 1986. Crystal and molecular structure of ß-methylcellobioside heptanitrate. Kristallografiya 31: 676–681.
41. Nikitin A.V., Shibanova T.A., Firgang S.I., Usov A.I., Sopin V.F. and Myasnikova R.M. 1987. Crystal and molecular structure of methyl-ß-cellobioside 6,6'-dinitrate. Kristallografiya 32: 896–900.
42. Nishiyama Y., Langan P. and Chanzy H. 2002. Crystal structure and hydrogen-bonding system in cellulose Iß from synchrotron X-ray and neutron fiber diffraction. J. Am. Chem. Soc. 124: 9074–9082.10.1021/ja0257319 ↗
43. Noordik J.H., Beurskens P.T., Bennema P., Visser R.A. and Gould R.O. 1984. Crystal structure, polarity and morphology of 4-O-ß-D-galactopyranosyl-α-D-glucopyranose monohydrate (a-lactose monohydrate): a redetermination. Z. Kristallogr. 168: 59–65.10.1524/zkri.1984.168.1-4.59 ↗
44. Olmstead M.M., Hu M., Kurth M.J., Krochta J.M. and Hsieh Y.-L. 1997. Lactosylurea dihydrate. Acta Crystallogr. Sect. C (Cryst. Struct. Commun.) 53: 915–916.10.1107/S0108270197002849 ↗
45. Peralta-Inga Z., Johnson G.P., Dowd M.K., Rendleman J.A., Stevens E.D. and French A.D. 2002. The crystal structure of the a-cellobiose·2 NaI·2 H2O complex in the context of related structures and conformational analysis. Carbohydr. Res. 337: 851–861.10.1016/S0008-6215(02)00041-1 ↗
46. Perez S., Imberty A., Engelsen S., Gruza J., Mazeau K., Jimenez-Barbero J. et al. 1998. Acomparison and chemometric analysis of several molecular mechanics force fields and parameter sets applied to carbohydrates. Carbohydr. Res. 314: 141–155.10.1016/S0008-6215(98)00305-X ↗
47. Perez S. and Brisse F. 1977. The crystal and molecular structure of a trisaccharide, ß-cellotriose undecaacetate: 1,2,3,6-tetra-O-acetyl-4-O-[2,3,6-tri-O-acetyl-4-O-(2,3,4,6-tetra-O-acetyl-ß-D-glucopyranosyl)-ß-D-glucopyranosyl]-ß-D-glucopyranose. Acta Crystallogr. Sect. B 33: 2578–2584.10.1107/S0567740877008942 ↗
48. Ramakrishnan C. and Ramachandran G.N. 1965. Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformation for a pair of peptide units. Biophys. J. 5: 909–933.10.1016/S0006-3495(65)86759-5 ↗
49. Raymond S., Henrissat B., Qui D.T., Kvick A. and Chanzy H. 1995. The crystal structure of methyl ß-cellotrioside monohydrate 0.25 ethanolate and its relationship to cellulose II. Carbohydr. Res. 277: 209–229.10.1016/0008-6215(95)00219-J ↗
50. Rees D.A. and Skerrett R.J. 1968. Conformational analysis of cellobiose, cellulose and xylan. Carbohydr. Res. 7: 334–348.10.1016/S0008-6215(00)81206-9 ↗
51. Rencurosi A., Röhrling J., Pauli J., Potthast A., Jäger C., Pérez S., Kosma P. and Imberty A. 2002. Polymorphism in the crystal structure of the cellulose fragment analogue methyl 4-O-methyl-ß-D-glucopyranosyl-(1-4)-ß-D-glucopyranoside. Angewandte Chem. Int. Ed. Engl. 41: 4277–4281.10.1002/1521-3773(20021115)41:22<4277::AID-ANIE4277>3.0.CO;2-I ↗
52. Shimanouchi T. and Mizushima S.-I. 1955. On the helical configuration of a polymer chain. J. Chem. Phys. 33: 707–711.10.1063/1.1742083 ↗
53. Shuto Y., Okamura K., Azuma J., Tanaka F. and Chanzy H. 1990. X-ray and electron diffraction study of some cellulose derivatives. In: Kennedy J.F., Phillips G.O. and Williams P.A. (eds), Cellulose. Ellis Horwood, Chichester, UK, pp. 283–288.
54. Steinmeier H. and Zugenmaier P. 1987. “Homogeneous” and “heterogeneous” cellulose triesters and a cellulose triurethane: Synthesis and structural investigations of the crystalline state. Carbohydr. Res. 164: 97–105.10.1016/0008-6215(87)80122-2 ↗
55. Stenutz R., Shang M. and Serianni A.S. 1999. Methyl β-lactoside (methyl 4-O-ß-D-galactopyranosyl-ß-D-glucopyranoside) methanol solvate. Acta Crystallogr. Sect. C (Cryst. Struct. Commun.) 55: 1719–1721.10.1107/S0108270199007994 ↗
56. Strati G.L., Willett J.L. and Momany F.A. 2002. Ab initio computational study of ß-cellobiose conformers using B3LYP/6-311++G**. Carbohydr. Res. 337: 1833–1849.10.1016/S0008-6215(02)00267-7 ↗
57. Sundararajan P.R. and Marchessault R.H. 1972. Conformational terminology for crystalline cellulose. Can. J. Chem. 50: 792–794.10.1139/v72-123 ↗
58. Taga T., Sumiya S., Osaki K., Utamura T. and Koizumi K. 1981. Structure of 1,2,3-tri-O-acetyl-4-O-(2,3,4,6-tetra-O-acetyl-ß-D-glucopyranosyl)-6-O-triphenylmethyl-ß-D-glucopyranose(6'-O-trityl-a-cellobiose heptaacetate). Acta Crystallogr. Sect. B 37: 963–966.10.1107/S0567740881004779 ↗
59. Whitaker P.M., Nieduszynski I.A. and Atkins E.D.T. 1974. Structural aspects of soda-cellulose II. Polymer 15: 125–127.10.1016/0032-3861(74)90015-9 ↗
60. Xia J., Srikrishnan T., Alderfer J.L., Jain R.K., Piskorz C.F. and Matta K.L. 2000. Chemical synthesis of sulfated oligosaccharides with a ß-D-Gal-(1,3)-[ß-D-Gal-(1,4)-(ß-L-Fuc-(1,3)-ß-D-GlcNAc-(1,6)]-a-D-GalNAc sequence. Carbohydr. Res. 329: 561–577.10.1016/S0008-6215(00)00211-1 ↗
61. Zugenmaier P. 1983. Structural investigations on cellulose derivatives. J. Appl. Polym. Sci: Appl. Polym. Symp. 37: 223–238.
62. Zugenmaier P. 1986. Structural investigations on some cellulose derivatives in the crystalline and liquid crystalline state. In: Young R.A. and Rowell R.M. (eds), Cellulose: Structure, Modification and Hydrolysis. John Wiley and Sons, New York, pp. 221–245.
63. Zugenmaier P. 2001. Conformation and packing of various crystalline cellulose fibers. Prog. Polym. Sci. 26: 1341–1417.10.1016/S0079-6700(01)00019-3 ↗