journal article·2022-01Open access

Prospects and challenges for FAIR toxicogenomics data

Laura A. Saarimäki, Georgia Melagraki, Antreas Afantitis, Iseult Lynch, Dario Greco

Nature Nanotechnology· Volume 17· Issue 1

Abstract

No abstract is available for this record. The assistant can identify its topic from the title, but cannot infer the study’s results.

Source: Not provided · Quality: missing

Research context

OpenAlex topics: Research Data Management Practices · Gene expression and cancer classification · Scientific Computing and Data Management

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (11)

Show source-provided references
1. Jeliazkova, N. et al. Towards FAIR nanosafety data. Nat. Nanotechnol. 16, 644–654 (2021).10.1038/s41565-021-00911-6 ↗
2. Faria, M. et al. Minimum information reporting in bio–nano experimental literature. Nat. Nanotechnol. 13, 777–785 (2018).10.1038/s41565-018-0246-4 ↗
3. Wilkinson, M. D. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci. Data 3, 160018 (2016).10.1038/sdata.2016.18 ↗
4. Saarimäki, L. A. et al. Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials. Sci. Data 8, 49 (2021).10.1038/s41597-021-00808-y ↗
5. Ammar, A. et al. A semi-automated workflow for FAIR maturity indicators in the life sciences. Nanomaterials 10, 2068 (2020).10.3390/nano10102068 ↗
6. Brazma, A. et al. Minimum information about a microarray experiment (MIAME)—toward standards for microarray data. Nat. Genet. 29, 365–371 (2001).10.1038/ng1201-365 ↗
7. Kinaret, P. A. S. et al. Transcriptomics in toxicogenomics, part I: experimental design, technologies, publicly available data, and regulatory aspects. Nanomaterials 10, 750 (2020).10.3390/nano10040750 ↗
8. Federico, A. et al. Transcriptomics in toxicogenomics, part II: preprocessing and differential expression analysis for high quality data. Nanomaterials 10, 903 (2020).10.3390/nano10050903 ↗
9. Mülhopt, S. et al. Characterization of nanoparticle batch-to-batch variability. Nanomaterials 8, 311 (2018).10.3390/nano8050311 ↗
10. Papadiamantis, A. G. et al. Metadata stewardship in nanosafety research: community-driven organisation of metadata schemas to support FAIR nanoscience data. Nanomaterials 10, 2033 (2020).10.3390/nano10102033 ↗
11. Serra, A. et al. Transcriptomics in toxicogenomics, part III: data modelling for risk assessment. Nanomaterials 10, 708 (2020).10.3390/nano10040708 ↗