journal article·2010-04

Identifying single nucleotides by tunnelling current

Makusu Tsutsui, Masateru Taniguchi, Kazumichi Yokota, Tomoji Kawai

Nature Nanotechnology· Volume 5· Issue 4
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Abstract

A major goal in medical research is to develop a DNA sequencing technique that is capable of reading an entire human genome at low cost. Recently, it was proposed that DNA sequencing could be performed by measuring the electron transport properties of the individual nucleotides in a DNA molecule. Here, we report electrical detection of single nucleotides using two configurable nanoelectrodes and show that electron transport through single nucleotides occurs by tunnelling. We also demonstrate statistical identification of the nucleotides based on their electrical conductivity, thereby providing an experimental basis for a DNA sequencing technology based on measurements of electron transport.
Source: europepmc · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Nanopore and Nanochannel Transport Studies · Advanced biosensing and bioanalysis techniques · Molecular Junctions and Nanostructures

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (30)

Show source-provided references
1. Collins, F. S., Green, A. E., Guttmacher, A. E. & Guyer, M. S. A vision for the future of genomics research. Nature 422, 835–847 (2003).10.1038/nature01626 ↗
2. Schloss, J. A. How to get genomes at one ten-thousandth the cost. Nature Biotechnol. 26, 1113–1115 (2008).10.1038/nbt1008-1113 ↗
3. Dekker, C. Solid-state nanopores. Nature Nanotech. 2, 209–215 (2007).10.1038/nnano.2007.27 ↗
4. Branton, D. et al. The potential and challenges of nanopore sequencing. Nature Biotechnol. 26, 1146–1153 (2008).10.1038/nbt.1495 ↗
5. Zwolak, M. & Di Ventra, M. Colloquim: physical approaches to DNA sequencing and detection. Rev. Mod. Phys. 80, 141–165 (2008).10.1103/RevModPhys.80.141 ↗
6. Clarke, J. et al. Continuous base identification for single-molecule nanopore DNA sequencing. Nature Nanotech. 4, 265–270 (2009).10.1038/nnano.2009.12 ↗
7. Stoddart, D., Heron, A. J., Mikhailova, E., Maglia, G. & Bayley, H. Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore. Proc. Natl Acad. Sci. USA 106, 7702–7707 (2009).10.1073/pnas.0901054106 ↗
8. Fologea, D. et al. Detecting single stranded DNA with a solid state nanopore. Nano Lett. 5, 1905–1909 (2005).10.1021/nl051199m ↗
9. Keyser, U. F. et al. Direct force measurements on DNA in a solid-state nanopore. Nature Phys. 2, 473–477 (2006).10.1038/nphys344 ↗
10. Gershow, M. & Golovchenko, J. A. Recapturing and trapping single molecules with a solid-state nanopore. Nature Nanotech. 2, 775–779 (2007).10.1038/nnano.2007.381 ↗
11. van Dorp, S., Keyser, U. F., Dekker, N. H., Dekker, C. & Lemay, S. G. Origin of the electrophoretic force on DNA in solid-state nanopores. Nature Phys. 5, 347–351 (2009).10.1038/nphys1230 ↗
12. Lagerqvist, J., Zwolak, M. & Di Ventra, M. Fast DNA sequencing via transverse electronic transport. Nano Lett. 6, 779–782 (2006).10.1021/nl0601076 ↗
13. Lagerqvist, J., Zwolak, M. & Di Ventra, M. Influence of the environment and probes on rapid DNA sequencing via transverse electronic transport. Biophys. J. 93, 2384–2390 (2007).10.1529/biophysj.106.102269 ↗
14. He, J., Lin, L., Zhang, P. & Lindsay, S. Identification of DNA basepairing via tunnel-current decay. Nano Lett. 7, 3854–3858 (2007).10.1021/nl0726205 ↗
15. Chang, S. et al. Tunnelling readout of hydrogen-bonding-based recognition. Nature Nanotech. 4, 297–301 (2009).10.1038/nnano.2009.48 ↗
16. Fischbein, M. D. & Drndic, M. Sub-10 nm device fabrication in a transmission electron microscope. Nano Lett. 7, 1329–1337 (2007).10.1021/nl0703626 ↗
17. Liang, X. & Chou, S. Y. Nanogap detector inside nanofluidic channel for real-time label-free DNA analysis. Nano Lett. 8, 1472–1476 (2008).10.1021/nl080473k ↗
18. Maleki, T., Mohammadi, S. & Ziaie, B. A nanofluidic channel with embedded transverse nanoelectrodes. Nanotechnology 20, 105302 (2009).10.1088/0957-4484/20/10/105302 ↗
19. Tsutsui, M., Taniguchi, M. & Kawai, T. Transverse field effects on DNA-sized particle dynamics. Nano Lett. 9, 1659–1662 (2009).10.1021/nl900177q ↗
20. Tsutsui, M., Taniguchi, M. & Kawai, T. Fabrication of 0.5 nm electrode gaps using self-breaking technique. Appl. Phys. Lett. 93, 163115 (2008).10.1063/1.3006063 ↗
21. Frisch, M. J. et al. Gaussian03, revisionC.02. (Gaussian, Inc., 2003).
22. Troisi, A. & Ratner, M. A. Molecular signatures in the transport properties of molecular wire junctions: what makes a junction ‘molecular’? Small 2, 172–181 (2006).10.1002/smll.200500201 ↗
23. Simmons, J. G. Generalized formula for the electronic tunnel effect between similar electrodes separated by a thin insulating film. J. Appl. Phys. 34, 1793–1803 (1963).10.1063/1.1702682 ↗
24. Wang, W., Lee, T. & Reed, M. A. Mechanism of electron conduction in self-assembled alkanethiol monolayer devices. Phys. Rev. B 68, 035416 (2003).10.1103/PhysRevB.68.035416 ↗
25. Kundu, J. et al. Adenine- and adenosine monophosphate (AMP)–gold binding interactions studied by surface-enhanced Raman and infrared spectroscopies. J. Phys. Chem. C 113, 14390–14397 (2009).10.1021/jp903126f ↗
26. Brown, K. A., Park, S. & Hamad-Schifferli, K. Nucleotide–surface interactions in DNA-modified Au–nanoparticle conjugates: sequence effects on reactivity and hybridization. J. Phys. Chem. C 112, 7517–7521 (2008).10.1021/jp711869p ↗
27. Taniguchi, M. & Kawai, T. DNA electronics. Physica E 33, 1–12 (2006).10.1016/j.physe.2006.01.005 ↗
28. Peng, H. & Ling, X. S. Reverse DNA translocation through a solid-state nanopore by magnetic tweezers. Nanotechnology 20, 185101 (2009).10.1088/0957-4484/20/18/185101 ↗
29. Agraït, N., Yeyati, A. L. & van Ruitenbeek, J. M. Quantum properties of atomic-sized conductors. Phys. Rep. 377, 81–279 (2003).10.1016/S0370-1573(02)00633-6 ↗
30. Tsutsui, M., Shoji, K., Taniguchi, M. & Kawai, T. Formation and self-breaking mechanism of stable atom-sized junctions. Nano Lett. 8, 345–349 (2008).10.1021/nl073003j ↗