journal article·2024-08-14Open access

Machine Learning Allowed Interpreting Toxicity of a Fe-Doped CuO NM Library Large Data Set─An Environmental In Vivo Case Study

Janeck J. Scott-Fordsmand, Susana I.L. Gomes, Suman Pokhrel, Lutz Mädler, Matteo Fasano, Pietro Asinari, Kaido Tämm, Jaak Jänes, Mónica J.B. Amorim

ACS Applied Materials & Interfaces· Volume 16· Issue 32

Abstract

High Resolution Image Download MS PowerPoint Slide The wide variation of nanomaterial (NM) characters (size, shape, and properties) and the related impacts on living organisms make it virtually impossible to assess their safety; the need for modeling has been urged for long. We here investigate the custom-designed 1–10% Fe-doped CuO NM library. Effects were assessed using the soil ecotoxicology model Enchytraeus crypticus (Oligochaeta) in the standard 21 days plus its extension (49 days). Results showed that 10%Fe-CuO was the most toxic (21 days reproduction EC50 = 650 mg NM/kg soil) and Fe 3 O 4 NM was the least toxic (no effects up to 3200 mg NM/kg soil). All other NMs caused similar effects to E. crypticus (21 days reproduction EC50 ranging from 875 to 1923 mg NM/kg soil, with overlapping confidence intervals). Aiming to identify the key NM characteristics responsible for the toxicity, machine learning (ML) modeling was used to analyze the large data set [9 NMs, 68 descriptors, 6 concentrations, 2 exposure times (21 and 49 days), 2 endpoints (survival and reproduction)]. ML allowed us to separate experimental related parameters (e.g., zeta potential) from particle-specific descriptors (e.g., force vectors) for the best identification of important descriptors. We observed that concentration-dependent descriptors (environmental parameters, e.g., zeta potential) were the most important under standard test duration (21 day) but not for longer exposure (closer representation of real-world conditions). In the longer exposure (49 days), the particle-specific descriptors were more important than the concentration-dependent parameters. The longer-term exposure showed that the steepness of the concentration–response decreased with an increased Fe content in the NMs. Longer-term exposure should be a requirement in the hazard assessment of NMs in addition to the standard in OECD guidelines for chemicals. The progress toward ML analysis is desirable given its need for such large data sets and significant power to link NM descriptors to effects in animals. This is beyond the current univariate and concentration–response modeling analysis.
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Research context

OpenAlex topics: Electrochemical Analysis and Applications · Water Quality Monitoring and Analysis

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Affiliations

Department of Ecoscience, Aarhus University, C.F. Mo̷llers Alle 4, DK-8000 Aarhus, Denmark

Department of Biology & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal

Department of Production Engineering, University of Bremen, Badgasteiner Str. 1, 28359 Bremen, Germany

Leibniz Institute for Materials Engineering IWT, Badgasteiner Str. 3, 28359 Bremen, Germany

Department of Energy, Politecnico di Torino, Corso Duca degli Abruzzi 24, Torino 10129, Italy

INRIM, Istituto Nazionale di Ricerca Metrologica, Strada delle Cacce 91, Torino 10135, Italy

Institute of Chemistry, University of Tartu, Ravila 14a, Tartu 50411, Estonia

Funding

H2020 Environment · European Regional Development Fund · Funda??o para a Ci?ncia e a Tecnologia

References (49)

Show source-provided references
1. 10.1051/matecconf/20171290201310.1051/matecconf/201712902013 ↗
2. 10.1039/D2NA00439A10.1039/D2NA00439A ↗
3. 10.3390/molecules2802066110.3390/molecules28020661 ↗
4. 10.1002/wnan.151310.1002/wnan.1513 ↗
5. 10.1016/j.nantod.2021.10124210.1016/j.nantod.2021.101242 ↗
6. 10.3390/toxics1007039310.3390/toxics10070393 ↗
7. 10.1016/j.emcon.2023.10021210.1016/j.emcon.2023.100212 ↗
8. 10.1021/acsnano.2c0030110.1021/acsnano.2c00301 ↗
9. 10.1016/j.carbon.2022.12.06510.1016/j.carbon.2022.12.065 ↗
10. 10.1039/C7NR05618D10.1039/C7NR05618D ↗
11. 10.1016/j.ecoenv.2019.10973310.1016/j.ecoenv.2019.109733 ↗
12. 10.1016/j.scitotenv.2022.16030310.1016/j.scitotenv.2022.160303 ↗
13. 10.1016/j.comtox.2023.10027710.1016/j.comtox.2023.100277 ↗
14. 10.1002/9781119817512.ch910.1002/9781119817512.ch9 ↗
15. 10.1039/D1NR03231C10.1039/D1NR03231C ↗
16. 10.1016/j.envint.2023.10802510.1016/j.envint.2023.108025 ↗
17. 10.1007/s00204-020-02656-y10.1007/s00204-020-02656-y ↗
18. 10.1016/j.micron.2023.10347310.1016/j.micron.2023.103473 ↗
19. 10.1016/j.physa.2012.11.03010.1016/j.physa.2012.11.030 ↗
20. 10.1016/j.envint.2022.10718410.1016/j.envint.2022.107184 ↗
21. 10.1007/s11051-023-05806-210.1007/s11051-023-05806-2 ↗
22. 10.1039/D0EN01031F10.1039/D0EN01031F ↗
23. 10.1016/j.mattod.2023.05.02910.1016/j.mattod.2023.05.029 ↗
24. 10.1038/s41598-023-33524-110.1038/s41598-023-33524-1 ↗
25. 10.1021/es505646210.1021/es5056462 ↗
26. 10.1021/acsnano.9b0893810.1021/acsnano.9b08938 ↗
27. 10.1021/acsnano.6b0649510.1021/acsnano.6b06495 ↗
28. 10.1016/j.impact.2023.10045810.1016/j.impact.2023.100458 ↗
29. OECD 220. OECD Guideline for the Testing of Chemicals No. 220. Enchytraeid Reproduction Test. Organization for Economic Cooperation and Development, Paris, France, 2016.
30. 10.1016/j.apsoil.2017.05.01410.1016/j.apsoil.2017.05.014 ↗
31. 10.1021/cg901042310.1021/cg9010423 ↗
32. 10.1002/ange.20191231210.1002/ange.201912312 ↗
33. 10.1002/smll.20180176510.1002/smll.201801765 ↗
34. 10.1016/j.envpol.2017.01.06710.1016/j.envpol.2017.01.067 ↗
35. 10.1007/s11064-020-02954-y10.1007/s11064-020-02954-y ↗
36. 10.1016/j.watres.2017.12.06910.1016/j.watres.2017.12.069 ↗
37. 10.3109/17435390.2015.110714510.3109/17435390.2015.1107145 ↗
38. 10.1016/0304-386X(93)90012-310.1016/0304-386X(93)90012-3 ↗
39. 10.1039/C6NR04376C10.1039/C6NR04376C ↗
40. 10.1039/C8NR05220D10.1039/C8NR05220D ↗
41. 10.1098/rspa.1924.008210.1098/rspa.1924.0082 ↗
42. 10.1051/m2an/196903R10035110.1051/m2an/196903R100351 ↗
43. Satopaa, V.; Albrecht, J.; Irwin, D.; Raghavan, B. Finding a ″Kneedle″ in a Haystack: Detecting Knee Points in System Behavior. In 31st International Conference on Distributed Computing Systems Workshops; IEEE, 2011; pp 166–171.10.1109/ICDCSW.2011.20 ↗
44. Nanoparticle shell-depth calculator https://nanogen.me/shell-depth (accessed Mar 21, 2024).
45. OECD. Guidance on Sample Preparation and Dosimetry for the Safety Testing of Manufactured Nanomaterials. Series on the Safety of Manufactured Nanomaterials No. 36. 2012.
46. 10.1021/acs.est.8b0253710.1021/acs.est.8b02537 ↗
47. 10.1109/FSKD.2017.839331110.1109/FSKD.2017.8393311 ↗
48. 10.11591/ijai.v8.i1.pp77-8610.11591/ijai.v8.i1.pp77-86 ↗
49. 10.1007/0-387-25465-X_1510.1007/0-387-25465-X_15 ↗