journal article·2014-09-10

Sodium Hexadecyl Sulfate as an Interfacial Substance Adjusting the Adsorption of a Protein on Carbon Nanotubes

Jian Sun, Kun Du, Li Fu, Jiang Gao, Haiyang Zhang, Wei Feng, Peijun Ji

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Abstract

Carbon nanotubes (CNTs) were functionalized with sodium hexadecyl sulfate (SHS). The lysozyme adsorbed on the SHS-CNTs exhibited a higher activity than that immobilized on the nonfunctionalized CNTs. To explain the experimental results and explore the mechanism of lysozyme adsorption, large-scale molecular dynamics simulations have been performed for a four-component system, including lysozyme, SHS, CNTs in explicit water. It has been found that the assembled SHS molecules form a soft layer on the surface of CNTs. The interactions between lysozyme and SHS induce the rearrangement of SHS molecules, forming a saddle-like structure on the CNT surface. The saddle-like structure fits the shape of the lysozyme, and the active-site cleft of the lysozyme is exposed to the water phase. Whereas, for the lysozyme adsorbed on the nonfunctionalized CNT, due to the hydrophobic interactions, the active-site cleft of the enzyme tends to face the wall of the CNT. The results of this work demonstrate that the SHS molecules as the interfacial substance have a function of adjusting the lysozyme with an appropriate orientation, which is favorable for the lysozyme having a higher activity.
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Research context

OpenAlex topics: Nanopore and Nanochannel Transport Studies · Protein purification and stability · Microfluidic and Bio-sensing Technologies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Beijing Key Lab of Bioprocess, Department of Biochemical Engineering and ‡Department of Chemical Engineering, Beijing University of Chemical Technology, Beijing, 100029, China

Funding

Ministry of Science and Technology of the People's Republic of China · National Natural Science Foundation of China

References (54)

Show source-provided references
1. Wang Y. D. · Langmuir · 2006 · 22 · 977610.1021/la060857v ↗
2. Wang L. · J. Biotechnol. · 2010 · 150 · 5710.1016/j.jbiotec.2010.07.005 ↗
3. Zhang B. · Nano Lett. · 2009 · 9 · 228010.1021/nl900437n ↗
4. Gao Y. · Bioconjugate Chem. · 2008 · 19 · 194510.1021/bc800051c ↗
5. Hansen B. J. · ACS Nano · 2010 · 4 · 364710.1021/nn100845b ↗
6. Feng W. · Biotechnol. Adv. · 2011 · 29 · 88910.1016/j.biotechadv.2011.07.007 ↗
7. Tasis D. · Chem. Rev. · 2006 · 106 · 110510.1021/cr050569o ↗
8. Coleman J. N. · Adv. Funct. Mater. · 2009 · 19 · 368010.1002/adfm.200901640 ↗
9. Wenseleers W. · Adv. Funct. Mater. · 2004 · 14 · 110510.1002/adfm.200400130 ↗
10. Sun Z. · J. Phys. Chem. C · 2008 · 112 · 1069210.1021/jp8021634 ↗
11. Xu Z. · Nano Lett. · 2010 · 10 · 98510.1021/nl9041005 ↗
12. Chen R. J. · Proc. Natl. Acad. Sci. U. S. A. · 2003 · 100 · 498410.1073/pnas.0837064100 ↗
13. Yan Y. · Langmuir · 2005 · 21 · 656010.1021/la050043z ↗
14. Shim M. · Nano Lett. · 2002 · 2 · 28510.1021/nl015692j ↗
15. McDonald T. J. · Nano Lett. · 2007 · 7 · 352810.1021/nl072319o ↗
16. Calvaresi M. · Acc. Chem. Res. · 2013 · 46 · 245410.1021/ar300347d ↗
17. Nepal D. · Small · 2006 · 2 · 40610.1002/smll.200500351 ↗
18. Nepal D. · Small · 2007 · 3 · 125910.1002/smll.200600511 ↗
19. Bomboi F. · J. Colloid Interface Sci. · 2011 · 355 · 34210.1016/j.jcis.2010.12.026 ↗
20. Horn D. W. · J. Phys. Chem. C · 2012 · 116 · 1034110.1021/jp300242a ↗
21. Nie H. · Nanoscale · 2011 · 3 · 97010.1039/c0nr00831a ↗
22. Matsuura K. · Chem. Phys. Lett. · 2006 · 429 · 49710.1016/j.cplett.2006.08.044 ↗
23. Horn D. W. · Adv. Funct. Mater. · 2013 · 23 · 608210.1002/adfm.201300221 ↗
24. Calvaresi M. · Chem.—Eur. J. · 2012 · 18 · 430810.1002/chem.201102703 ↗
25. Shen J. W. · Biomaterials · 2008 · 29 · 384710.1016/j.biomaterials.2008.06.013 ↗
26. Feng W. · Soft Matter · 2012 · 8 · 714310.1039/c2sm25231g ↗
27. Raffaini G. · Langmuir · 2010 · 26 · 567910.1021/la903769c ↗
28. Raffaini G. · Langmuir · 2013 · 29 · 488310.1021/la3050779 ↗
29. Li L. · AIChE J. · 2012 · 58 · 299710.1002/aic.13724 ↗
30. Tan H. · Bioresour. Technol. · 2012 · 115 · 17210.1016/j.biortech.2011.10.066 ↗
31. Cavalieri F. · ACS Appl. Mater. Interfaces · 2013 · 5 · 46410.1021/am302660j ↗
32. Du K. · ACS Sustainable Chem. Eng. · 2014 · 2 · 142010.1021/sc500218e ↗
33. Gordon J. · Nucleic Acids Res. · 2005 · 33 · W36810.1093/nar/gki464 ↗
34. Schuttelkopf A. W. · Acta Crystallogr., Sect. D: Biol. Crystallogr. · 2004 · 60 · 135510.1107/S0907444904011679 ↗
35. Schweighofer K. J. · J. Phys. Chem. B · 1997 · 101 · 379310.1021/jp963460g ↗
36. Hess B. · J. Chem. Theory Comput. · 2008 · 4 · 43510.1021/ct700301q ↗
37. Oostenbrink C. · J. Comput. Chem. · 2004 · 25 · 165610.1002/jcc.20090 ↗
38. Berendsen H. J. C. · J. Phys. Chem. · 1987 · 91 · 626910.1021/j100308a038 ↗
39. Berendsen H. · J. Chem. Phys. · 1984 · 81 · 368410.1063/1.448118 ↗
40. Essmann U. · J. Chem. Phys. · 1995 · 103 · 857710.1063/1.470117 ↗
41. Hung S. W. · J. Chem. Phys. · 2011 · 134 · 19470510.1063/1.3592559 ↗
42. Torrie G. M. · J. Comput. Phys. · 1977 · 23 · 18710.1016/0021-9991(77)90121-8 ↗
43. Kumar S. · J. Comput. Chem. · 1992 · 13 · 101110.1002/jcc.540130812 ↗
44. Youn S. C. · J. Am. Chem. Soc. · 2009 · 131 · 74210.1021/ja8073209 ↗
45. Sun Z. Y. · Adv. Mater. · 2005 · 17 · 299310.1002/adma.200501562 ↗
46. Feng W. · Chem. Eng. Sci. · 2011 · 66 · 480710.1016/j.ces.2011.06.048 ↗
47. Chennamsetty N. · J. Chem. Phys. · 2005 · 122 · 110.1063/1.1855291 ↗
48. Rubio D. A. R. · Langmuir · 1994 · 10 · 115110.1021/la00016a030 ↗
49. Smith P. K. · Anal. Biochem. · 1985 · 150 · 7610.1016/0003-2697(85)90442-7 ↗
50. Greenfield N. J. · Nat. Protocols · 2006 · 1 · 287610.1038/nprot.2006.202 ↗
51. Amadei A. · Proteins: Struct. Funct. Genet. · 1993 · 17 · 41210.1002/prot.340170408 ↗
52. Peters G. H. · Biophys. J. · 1996 · 71 · 224510.1016/S0006-3495(96)79428-6 ↗
53. Van der Spoel D. · Proteins: Struct. Funct. Genet. · 1996 · 24 · 45010.1002/(SICI)1097-0134(199604)24:4<450::AID-PROT5>3.0.CO;2-I ↗
54. Calvaresi M. · ACS Nano · 2014 · 8 · 187110.1021/nn4063374 ↗