journal article·2023-10-18Open access

In Situ Observation of Chemically Induced Protein Denaturation at Solvated Interfaces

Peter Niraj Nirmalraj, Marta D. Rossell, Walid Dachraoui, Damien Thompson, Michael Mayer

ACS Applied Materials & Interfaces· Volume 15· Issue 41

Abstract

High Resolution Image Download MS PowerPoint Slide Proteins unfold in chaotropic salt solutions, a process that is difficult to observe at the single protein level. The work presented here demonstrates that a liquid-based atomic force microscope and graphene liquid-cell-based scanning transmission electron microscope make it possible to observe chemically induced protein unfolding. To illustrate this capability, ferritin proteins were deposited on a graphene surface, and the concentration-dependent urea- or guanidinium-induced changes of morphology were monitored for holo-ferritin with its ferrihydrite core as well as apo-ferritin without this core. Depending on the chaotropic agent the liquid-based imaging setup captured an unexpected transformation of natively folded holo-ferritin proteins into rings after urea treatment but not after guanidinium treatment. Urea treatment of apo-ferritin did not result in nanorings, confirming that nanorings are a specific signature of denaturation of holo-ferritins after exposture to sufficiently high urea concentrations. Mapping the in situ images with molecular dynamics simulations of ferritin subunits in urea solutions suggests that electrostatic destabilization triggers denaturation of ferritin as urea makes direct contact with the protein and also disrupts the water H-bonding network in the ferritin solvation shell. Our findings deepen the understanding of protein denaturation studied using label-free techniques operating at the solid–liquid interface.
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Research context

OpenAlex topics: Protein Structure and Dynamics · Enzyme Structure and Function · Iron Metabolism and Disorders

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Transport at Nanoscale Interfaces Laboratory, Swiss Federal Laboratories for Materials Science and Technology, Überlandstrasse 129, 8600 Dübendorf, Switzerland

Adolphe Merkle Institute, University of Fribourg, Chemin des Verdiers 4, CH-1700 Fribourg, Switzerland

Electron Microscopy Center, Swiss Federal Laboratories for Materials Science and Technology, Überlandstrasse 129, 8600 Dübendorf, Switzerland

Department of Physics, Bernal Institute, University of Limerick, Limerick V94T9PX, Ireland

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung · Science Foundation Ireland · Adolphe Merkle Foundation

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