journal article·2021-03-31

Magnetic Nanoparticles as a Tool for Remote DNA Manipulations at a Single-Molecule Level

Aleksey A. Nikitin, Anton Yu Yurenya, Timofei S. Zatsepin, Ilya O. Aparin, Vladimir P. Chekhonin, Alexander G. Majouga, Michael Farle, Ulf Wiedwald, Maxim A. Abakumov

ACS Applied Materials & Interfaces· Volume 13· Issue 12
Publisher page

Abstract

Remote control of cells and single molecules by magnetic nanoparticles in nonheating external magnetic fields is a perspective approach for many applications such as cancer treatment and enzyme activity regulation. However, the possibility and mechanisms of direct effects of small individual magnetic nanoparticles on such processes in magneto-mechanical experiments still remain unclear. In this work, we have shown remote-controlled mechanical dissociation of short DNA duplexes (18-60 bp) under the influence of nonheating low-frequency alternating magnetic fields using individual 11 nm magnetic nanoparticles. The developed technique allows (1) simultaneous manipulation of millions of individual DNA molecules and (2) evaluation of energies of intermolecular interactions in short DNA duplexes or in other molecules. Finally, we have shown that DNA duplexes dissociation is mediated by mechanical stress and produced by the movement of magnetic nanoparticles in magnetic fields, but not by local overheating. The presented technique opens a new avenue for high-precision manipulation of DNA and generation of biosensors for quantification of energies of intermolecular interaction.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Microfluidic and Bio-sensing Technologies · Nanopore and Nanochannel Transport Studies · Magnetic and Electromagnetic Effects

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

National University of Science and Technology (MISIS), Moscow 119049, Russia

M. V. Lomonosov Moscow State University, Moscow 119991, Russia

National Research Center “Kurchatov Institute”, Moscow 123098, Russia

Skolkovo Institute of Science and Technology, Moscow 121205, Russia

Department of Medical Nanobiotechnology, N. I. Pirogov Russian National Research Medical University, Moscow 117997, Russia

D. Mendeleev University of Chemical Technology of Russia, Moscow 125047, Russia

Faculty of Physics and Center for Nanointegration Duisburg-Essen, University of Duisburg-Essen, Duisburg 47057, Germany

Funding

Russian Foundation for Basic Research · Ministry of Science and Higher Education of the Russian Federation

References (55)

Show source-provided references
1. 10.1093/nar/gkl03510.1093/nar/gkl035 ↗
2. 10.1021/nn406302j10.1021/nn406302j ↗
3. 10.7150/thno.1835210.7150/thno.18352 ↗
4. 10.1016/j.jconrel.2015.12.02810.1016/j.jconrel.2015.12.028 ↗
5. 10.1039/D0NA00187B10.1039/D0NA00187B ↗
6. 10.3390/nano904055110.3390/nano9040551 ↗
7. 10.1038/nnano.2010.12510.1038/nnano.2010.125 ↗
8. 10.1021/nn303308v10.1021/nn303308v ↗
9. 10.1039/C5AY02334C10.1039/C5AY02334C ↗
10. 10.1039/C8LC01323C10.1039/C8LC01323C ↗
11. 10.1038/s41467-018-03601-510.1038/s41467-018-03601-5 ↗
12. 10.1038/nmeth.121810.1038/nmeth.1218 ↗
13. 10.1039/c3ib40185e10.1039/c3ib40185e ↗
14. 10.1021/ac050057+10.1021/ac050057+ ↗
15. 10.1063/1.353195910.1063/1.3531959 ↗
16. 10.1073/pnas.111353210910.1073/pnas.1113532109 ↗
17. 10.3390/ijms14081597710.3390/ijms140815977 ↗
18. 10.1038/srep2246710.1038/srep22467 ↗
19. 10.1038/nnano.2013.2310.1038/nnano.2013.23 ↗
20. 10.1016/j.cell.2016.04.04510.1016/j.cell.2016.04.045 ↗
21. 10.1021/nn502061610.1021/nn5020616 ↗
22. 10.1063/1.365602010.1063/1.3656020 ↗
23. 10.1016/j.devcel.2008.07.00910.1016/j.devcel.2008.07.009 ↗
24. 10.1038/nmeth.221010.1038/nmeth.2210 ↗
25. 10.1038/nnano.2007.41810.1038/nnano.2007.418 ↗
26. 10.1002/smll.20190096110.1002/smll.201900961 ↗
27. 10.1126/science.115142410.1126/science.1151424 ↗
28. 10.1093/nar/gkg59510.1093/nar/gkg595 ↗
29. 10.3762/bjnano.9.25110.3762/bjnano.9.251 ↗
30. 10.1088/0957-4484/24/45/45570210.1088/0957-4484/24/45/455702 ↗
31. 10.1021/acs.chemmater.5b0097610.1021/acs.chemmater.5b00976 ↗
32. 10.1088/2058-7058/16/3/4010.1088/2058-7058/16/3/40 ↗
33. 10.7554/eLife.1721010.7554/eLife.17210 ↗
34. 10.1016/j.jconrel.2015.09.03810.1016/j.jconrel.2015.09.038 ↗
35. 10.1088/0957-4484/25/45/45200110.1088/0957-4484/25/45/452001 ↗
36. 10.1039/c3nr00544e10.1039/c3nr00544e ↗
37. 10.2217/17435889.3.6.83110.2217/17435889.3.6.831 ↗
38. 10.1021/acs.jpcc.9b0679010.1021/acs.jpcc.9b06790 ↗
39. 10.1109/TNANO.2011.211604010.1109/TNANO.2011.2116040 ↗
40. 10.1007/s00249000010710.1007/s002490000107 ↗
41. 10.1073/pnas.96.20.1127710.1073/pnas.96.20.11277 ↗
42. 10.1038/nature0140510.1038/nature01405 ↗
43. 10.1038/nature0181010.1038/nature01810 ↗
44. 10.1103/PhysRevLett.100.14830110.1103/PhysRevLett.100.148301 ↗
45. 10.1038/nmeth.152010.1038/nmeth.1520 ↗
46. 10.1016/j.bpj.2009.09.04010.1016/j.bpj.2009.09.040 ↗
47. 10.1063/1.278496710.1063/1.2784967 ↗
48. 10.1073/pnas.050629010210.1073/pnas.0506290102 ↗
49. 10.1021/nl080203210.1021/nl0802032 ↗
50. 10.1021/nl400188q10.1021/nl400188q ↗
51. Rutkauskas M. · Methods Enzymol. · 2017 · 582 · 23910.1016/bs.mie.2016.10.001 ↗
52. 10.1021/acs.bioconjchem.7b0046210.1021/acs.bioconjchem.7b00462 ↗
53. 10.1016/j.jmmm.2017.05.03910.1016/j.jmmm.2017.05.039 ↗
54. 10.1038/srep1436110.1038/srep14361 ↗
55. 10.1093/nar/gkm23410.1093/nar/gkm234 ↗