Adsorption of Arginine–Glycine–Aspartate Tripeptide onto Negatively Charged Rutile (110) Mediated by Cations: The Effect of Surface Hydroxylation
Source abstract
Abstract
Classical molecular dynamics (MD) simulations were employed to investigate the adsorption behaviors of arginine-glycine-aspartate (RGD) tripeptide onto the negatively charged hydroxylated/nonhydroxylated rutile (110) surfaces, mediated by biologically important cations (Na+ or Ca2+). The simulation results indicate that the inherent nature of the cation determines its binding strength, thereby regulating the adsorption geometry of the peptide. The sparse hydroxyl groups on the nonhydroxylated rutile diminish the probability of H-bond formation between RGD and the surface, resulting in an early desorption of the peptide even with a mediating Na+ ion. In contrast, the negatively charged aspartate (Asp) side chain is bridged to the negatively charged hydroxylated rutile by an inner-sphere Na+ ion, in coordination with the Asp-rutile hydrogen bonds at the anchoring sites. The inner- and outer-sphere Ca2+ ions are demonstrated to be capable of "trapping" RGD on both hydroxylated and nonhydroxylated rutile, in the absence of hydrogen bonds with the surface. The strongly bound inner-sphere mediating Ca2+ ion exerts a "gluing" effect on the Asp side chain, producing a tightly packed RGD-rutile complex, whereas a less localized distribution density of the outer-sphere mediating Ca2+ ion results in a higher mobility of the Asp side chain. The intramolecular interaction is suggested to facilitate the structural stability of RGD adsorbed on the negative rutile in a "horseshoe" configuration.
Source: openalex_inverted_index · Quality: baseline
Research context
OpenAlex topics: Supramolecular Self-Assembly in Materials · Chemical Synthesis and Analysis · Advanced biosensing and bioanalysis techniques
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
Center for Precision Engineering, Harbin Institute of Technology, P.O. Box 413, Harbin, Heilongjiang 150001, China
Department of Chemical & Material Engineering, University of Dayton, 300 College Park, Dayton, Ohio 45469, United States
Department of Chemical & Biomolecular Engineering, Vanderbilt University, Nashville, Tennessee 37235-1604, United States
Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6494, United States
References (72)
Show source-provided references
1. Gray J. J. · Curr. Opin. Struct. Biol. · 2004 · 14 · 11010.1016/j.sbi.2003.12.001 ↗
2. Sarikaya M. · Nat. Mater. · 2003 · 2 · 57710.1038/nmat964 ↗
3. Latour R. A. · Biointerphases · 2008 · 3 · FC210.1116/1.2965132 ↗
4. Felice R. D. · J. Phys. Chem. Lett. · 2011 · 2 · 151010.1021/jz200297k ↗
5. Petrie T. A. · Biomaterials · 2008 · 29 · 284910.1016/j.biomaterials.2008.03.036 ↗
6. Barber T. A. · J. Biomed. Mater. Res. A · 2007 · 80 · 30610.1002/jbm.a.30927 ↗
7. Kilpadi K. L. · J. Biomed. Mater. Res. · 2001 · 57 · 25810.1002/1097-4636(200111)57:2<258::AID-JBM1166>3.0.CO;2-R ↗
8. Hennessy K. M. · Biomaterials · 2009 · 30 · 189810.1016/j.biomaterials.2008.12.053 ↗
9. Vallee A. · Acc. Chem. Res. · 2010 · 43 · 129710.1021/ar100017n ↗
10. Costa D. · J. Biomed. Mater. Res. A. · 2012 · 9999 · 1
11. Tamerler C. · Philos. Trans. R. Soc. A–Math. Phys. Eng. Sci. · 2009 · 367 · 170510.1098/rsta.2009.0018 ↗
12. Schneider J. · J. Am. Chem. Soc. · 2012 · 134 · 240710.1021/ja210744g ↗
13. Pierschbacher M. D. · Nature · 1984 · 309 · 3010.1038/309030a0 ↗
14. Ruoslahti E. · Science · 1987 · 238 · 49110.1126/science.2821619 ↗
15. Brighton C. T. · J. Orthop. Res. · 1992 · 10 · 76610.1002/jor.1100100604 ↗
16. Grzesik W. J. · J. Bone Miner. Res. · 1994 · 9 · 48710.1002/jbmr.5650090408 ↗
17. Ferris D. M. · Biomaterials · 1999 · 20 · 232310.1016/S0142-9612(99)00161-1 ↗
18. Nguyen M. N. · Biomacromolecules · 2012 · 13 · 89610.1021/bm201812u ↗
19. Schliephake H. · Clin. Oral Implant. Res. · 2002 · 13 · 31210.1034/j.1600-0501.2002.130312.x ↗
20. Rammelta S. · Biomaterials · 2006 · 27 · 556110.1016/j.biomaterials.2006.06.034 ↗
21. Chen J. · Mater. Sci. Eng. C–Mater. Biol. Appl. · 2011 · 31 · 82610.1016/j.msec.2010.12.019 ↗
22. Maddikeri R. R. · J. Biomed. Mater. Res. A. · 2008 · 84 · 42510.1002/jbm.a.31323 ↗
23. Schaffner P. · Cell. Mol. Life Sci. · 2003 · 60 · 11910.1007/s000180300008 ↗
24. Jones F. H. · Surf. Sci. Rep. · 2001 · 42 · 7910.1016/S0167-5729(00)00011-X ↗
25. Massaro C. · J. Mater. Sci.: Mater. Med. · 2002 · 13 · 535
26. Dachille F. · Am. Mineral. · 1968 · 53 · 1929
27. Song D. P. · Acta Biomater. · 2010 · 6 · 68410.1016/j.actbio.2009.07.032 ↗
28. Zhang H. P. · J. Biomed. Mater. Res. A · 2011 · 96 · 46610.1002/jbm.a.33003 ↗
29. Chen M. J. · Phys. Chem. Chem. Phys. · 2010 · 12 · 40610.1039/B917919D ↗
30. Chen M. J. · J. Mater. Sci.: Mater. Med. · 2009 · 20 · 1931
31. Monti S. · J. Phys. Chem. C · 2007 · 111 · 776510.1021/jp071095v ↗
32. Monti S. · J. Phys. Chem. C · 2007 · 111 · 608610.1021/jp070266t ↗
33. Wu C. Y. · J. Phys. Chem. B · 2010 · 114 · 469210.1021/jp9109223 ↗
34. Feng B. · Mater. Charact. · 2002 · 49 · 12910.1016/S1044-5803(02)00341-8 ↗
35. Lesins V. · Colloid Polym. Sci. · 1988 · 266 · 118710.1007/BF01414409 ↗
36. Ravichandran S. · J. Phys. Chem. B · 2001 · 105 · 361010.1021/jp010223r ↗
37. Noinville V. · J. Phys. Chem. · 1995 · 99 · 151610.1021/j100005a023 ↗
38. Melander W. R. · J. Chromatogr. · 1989 · 469 · 310.1016/S0021-9673(01)96437-4 ↗
39. Imamura K. · J. Biosci. Bioeng. · 2007 · 103 · 710.1263/jbb.103.7 ↗
40. Roddick-Lanzilotta A. D. · J. Colloid Interface Sci. · 1999 · 217 · 19410.1006/jcis.1999.6367 ↗
41. Rocha S. · Langmuir · 2007 · 23 · 502210.1021/la0628120 ↗
42. Chen H. · Langmuir · 2008 · 24 · 685210.1021/la800314p ↗
43. Dishon M. · Langmuir · 2009 · 25 · 283110.1021/la803022b ↗
44. Hugenschmidt M. B. · Surf. Sci. · 1994 · 302 · 32910.1016/0039-6028(94)90837-0 ↗
45. Henderson M. A. · Surf. Sci. · 1996 · 355 · 15110.1016/0039-6028(95)01357-1 ↗
46. Allegretti F. · Phys. Rev. Lett. · 2005 · 95 · 22610410.1103/PhysRevLett.95.226104 ↗
47. Brinkley D. · Surf. Sci. · 1998 · 395 · 29210.1016/S0039-6028(97)00633-X ↗
48. Diebold U. · Surf. Sci. Rep. · 2003 · 48 · 5310.1016/S0167-5729(02)00100-0 ↗
49. Goniakowski J. · Surf. Sci. · 1996 · 350 · 14510.1016/0039-6028(95)01252-4 ↗
50. Lindan P. J. D. · Chem. Phys. Lett. · 1996 · 261 · 24610.1016/0009-2614(96)00934-7 ↗
51. Walle L. E. · Phys. Rev. B · 2009 · 80 · 23543610.1103/PhysRevB.80.235436 ↗
52. Lindan P. J. D. · Phys. Rev. B · 2005 · 72 · 07543910.1103/PhysRevB.72.075439 ↗
53. Zhang W. · J. Chem. Phys. · 2008 · 129 · 06470310.1063/1.2955452 ↗
54. Kowalski P. M. · Phys. Rev. B · 2009 · 79 · 11541010.1103/PhysRevB.79.115410 ↗
55. Ridley M. K. · Colloids Surf. A · 2002 · 204 · 29510.1016/S0927-7757(02)00017-1 ↗
56. Wu C. Y. · Langmuir · 2012 · 28 · 279910.1021/la204329d ↗
57. Předota M. · J. Phys. Chem. B · 2007 · 111 · 124510.1021/jp068250a ↗
58. Předota M. · J. Phys. Chem. B · 2004 · 108 · 1204910.1021/jp037197c ↗
59. Sano K. I. · J. Am. Chem. Soc. · 2003 · 125 · 1423410.1021/ja038414q ↗
60. LAMMPS Molecular Dynamics Simulator Home Page.http://lammps.sandia.gov(accessed Jan 18, 2011) .
61. Cornell W. D. · J. Am. Chem. Soc. · 1995 · 117 · 517910.1021/ja00124a002 ↗
62. Berendsen H. J. C. · J. Phys. Chem. · 1987 · 91 · 626910.1021/j100308a038 ↗
63. Allen, M. P.; Tildesley, D. J.InComputer Simulation of Liquids;Oxford University Press Inc.:New York, 1989; p22.
64. Carravetta V. · J. Phys. Chem. B · 2006 · 110 · 616010.1021/jp056760j ↗
65. Poly F. · Langmuir · 2000 · 16 · 123310.1021/la990506z ↗
66. Libera J. A. · J. Phys. Chem. B · 2005 · 109 · 2300110.1021/jp0534941 ↗
67. Cheng H. · Biophys. J. · 2006 · 90 · 116410.1529/biophysj.105.070649 ↗
68. Wu C. Y. · J. Phys. Chem. C · 2011 · 115 · 2237510.1021/jp2061915 ↗
69. Monti S. · J. Phys. Chem. C · 2009 · 113 · 243310.1021/jp809297c ↗
70. Thomson N. H. · Langmuir · 1996 · 12 · 590510.1021/la960497j ↗
71. Romanowski G. · Appl. Environ. Microbiol. · 1991 · 57 · 105710.1128/aem.57.4.1057-1061.1991 ↗
72. Zhang C. · J. Chem. Phys. · 2003 · 118 · 462010.1063/1.1543983 ↗