journal article·2025-07Open access

DNA Nanoflower‐Powered CRISPR/Cas12a Biosensing Platform for Ultrasensitive Protein Detection in Clinical Samples

Chen Ji, Yongming Han, Junru Li, Jie Wei, Wenzhi Yang, Xiaohan Cai, Siqi Tian, Congshuo Chen, Yuzheng Wang, Peipei Zhao, Shan Cao, Wenhao Zhang, Jinxinyi Xu, Bin Gu, Fengqin Li, Peifeng Liu, Jun Pu

Small Methods· Volume 9· Issue 7

Abstract

Abstract Protein markers secreted by various human cells provide crucial insights for the early diagnosis and prognostic assessment of clinical diseases. However, restricted by efficient protein marker signal amplification in real clinical samples with complex compositions, accurate, sensitive, and rapid detection of protein markers remains largely challenging. Herein, a DNA nanoflower (DNF)‐powered CRISPR/Cas12a biosensing platform (DNF‐CRISPR) is presented that employs the DNF in upstream to amplify input signals for protein markers, while utilizing the CRISPR system in downstream to amplify output signals by trans cleavage. This upstream and downstream cascade amplification sensing platform exhibits high sensitivity (500 fg mL−1), rapid (≤2 h), and a broad dynamic range (2.5 pg mL−1 to 25 ng mL−1). As a proof of concept, DNF‐CRISPR biosensing platform enables the quantitative detection of neutrophil gelatinase‐associated lipocalin (NGAL) biomarkers in blood and urine samples from kidney injury patients with 91% accuracy. This study provides a powerful and versatile approach for the accurate diagnosis of protein markers in clinical settings, facilitating the application of CRISPR/Cas12a‐based sensing platforms for non‐nucleic acid markers.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: CRISPR and Genetic Engineering · Advanced biosensing and bioanalysis techniques · Biosensors and Analytical Detection

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

State Key Laboratory of Systems Medicine for Cancer Shanghai Cancer Institute Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200032 China

Shanghai Key Laboratory for Cancer System Regulation and Clinical Translation Jiading District Central Hospital Renji Hospital Jiading Branch Shanghai 201800 China

Central Laboratory Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200127 China

Department of Stomatology Xinhua Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200092 China

Department of Urology Shanghai Pudong New Area People's Hospital Shanghai 201299 China

Department of Cardiology Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200127 China

Funding

National Natural Science Foundation of China · Natural Science Foundation of Shanghai Municipality

References (40)

Show source-provided references
1. 10.1038/s41392-024-01823-210.1038/s41392-024-01823-2 ↗
2. 10.1126/sciadv.abm308810.1126/sciadv.abm3088 ↗
3. 10.1038/s41551-019-0386-310.1038/s41551-019-0386-3 ↗
4. 10.1002/9780470015902.a0002625.pub310.1002/9780470015902.a0002625.pub3 ↗
5. 10.1038/ncomms1462210.1038/ncomms14622 ↗
6. Long W. · Anal. Chem. · 2022 · 95 · 1618
7. 10.1002/advs.20210280410.1002/advs.202102804 ↗
8. 10.1016/j.bios.2022.11422710.1016/j.bios.2022.114227 ↗
9. 10.1038/nbt123510.1038/nbt1235 ↗
10. 10.1038/s41378-024-00700-w10.1038/s41378-024-00700-w ↗
11. 10.1021/acsnano.4c0957810.1021/acsnano.4c09578 ↗
12. 10.1021/acsnano.0c0726410.1021/acsnano.0c07264 ↗
13. 10.1021/acs.analchem.0c0146410.1021/acs.analchem.0c01464 ↗
14. 10.1038/nprot.2007.26710.1038/nprot.2007.267 ↗
15. 10.1021/acs.analchem.0c0390410.1021/acs.analchem.0c03904 ↗
16. 10.1126/science.aaq017910.1126/science.aaq0179 ↗
17. 10.1038/s41587-020-0513-410.1038/s41587-020-0513-4 ↗
18. 10.1038/s41551-023-01033-110.1038/s41551-023-01033-1 ↗
19. 10.1002/smtd.20210093510.1002/smtd.202100935 ↗
20. 10.1002/EXP.2023012810.1002/EXP.20230128 ↗
21. 10.1016/j.tibtech.2018.12.00510.1016/j.tibtech.2018.12.005 ↗
22. 10.1016/j.cell.2016.04.05910.1016/j.cell.2016.04.059 ↗
23. 10.1007/s12274-023-5567-410.1007/s12274-023-5567-4 ↗
24. 10.1002/anie.20230553610.1002/anie.202305536 ↗
25. Guo L. · Small Methods · 2024
26. 10.1021/acs.chemrev.1c0024110.1021/acs.chemrev.1c00241 ↗
27. 10.1016/j.tibtech.2022.04.00610.1016/j.tibtech.2022.04.006 ↗
28. 10.1002/smtd.20220079410.1002/smtd.202200794 ↗
29. 10.1021/acs.analchem.9b0440310.1021/acs.analchem.9b04403 ↗
30. 10.1038/s41565-023-01348-910.1038/s41565-023-01348-9 ↗
31. 10.1021/acs.chemrev.0c0029410.1021/acs.chemrev.0c00294 ↗
32. 10.1016/j.trac.2019.03.00710.1016/j.trac.2019.03.007 ↗
33. 10.1021/acs.analchem.2c0498310.1021/acs.analchem.2c04983 ↗
34. 10.1002/anie.20140032310.1002/anie.201400323 ↗
35. 10.1002/smtd.20240091710.1002/smtd.202400917 ↗
36. 10.1038/s41467-023-43552-010.1038/s41467-023-43552-0 ↗
37. 10.1038/s41572-021-00284-z10.1038/s41572-021-00284-z ↗
38. 10.1161/CIRCULATIONAHA.117.03011210.1161/CIRCULATIONAHA.117.030112 ↗
39. 10.1038/s41581-018-0052-010.1038/s41581-018-0052-0 ↗
40. 10.1016/j.jhep.2019.07.00210.1016/j.jhep.2019.07.002 ↗