journal article·2025-01Open access

An EED/PRC2‐H19 Loop Regulates Cerebellar Development

Pei‐Pei Liu, Xiao Han, Xiao Li, Shang‐Kun Dai, Ya‐Jie Xu, Lin‐Fei Jiao, Hong‐Zhen Du, Li‐Hua Zhao, Rong‐Feng Li, Zhao‐Qian Teng, Yun‐Gui Yang, Chang‐Mei Liu

Advanced Science· Volume 12· Issue 1

Abstract

Abstract EED (embryonic ectoderm development) is a core subunit of the polycomb repressive complex 2 (PRC2), which senses the trimethylation of histone H3 lysine 27 (H3K27). However, its biological function in cerebellar development remains unknown. Here, we show that EED deletion from neural stem cells (NSCs) or cerebellar granule cell progenitors (GCPs) leads to reduced GCPs proliferation, cell death, cerebellar hypoplasia, and motor deficits in mice. Joint profiling of transcripts and ChIP‐seq analysis in cerebellar granule cells reveals that EED regulates bunches of genes involved in cerebellar development. EED ablation exhibits overactivation of a developmental repressor long non‐coding RNA H19. Importantly, an obvious H3K27ac enrichment is found at Ctcf , a trans‐activator of H19, and H3K27me3 enrichment at the H19 imprinting control region (ICR), suggesting that EED regulates H19 in an H3K27me3‐dependent manner. Intriguingly, H19 deletion reduces EED expression and the reprogramming of EED‐mediated H3K27me3 profiles, resulting in increased proliferation, differentiation, and decreased apoptosis of GCPs. Finally, molecular and genetic evidence provides that increased H19 expression is responsible for cerebellar hypoplasia and motor defects in EED mutant mice. Thus, this study demonstrates that EED, H19 forms a negative feedback loop, which plays a crucial role in cerebellar morphogenesis and controls cerebellar development.
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Research context

OpenAlex topics: Cancer-related molecular mechanisms research · Genetic Syndromes and Imprinting · RNA modifications and cancer

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Key Laboratory of Organ Regeneration and Reconstruction State Key Laboratory of Stem Cell and Reproductive Biology Institute of Zoology Chinese Academy of Sciences Beijing 100101 China

University of Chinese Academy of Sciences Beijing 100049 China

Institute for Stem Cell and Regeneration Chinese Academy of Sciences Beijing 100101 China

Key Laboratory of Genomic and Precision Medicine Collaborative Innovation Center of Genetics and Development College of Future Technology Beijing Institute of Genomics Chinese Academy of Sciences Beijing 100101 China

Sino‐Danish College University of Chinese Academy of Sciences Beijing 100049 China

Jiangsu Key Laboratory of Xenotransplantation Nanjing Medical University Nanjing 211166 China

Key Laboratory of Targeted Intervention of Cardiovascular Disease Collaborative Innovation Center for Cardiovascular Disease Translational Medicine Nanjing Medical University Nanjing 211166 China

China National Center for Bioinformation Beijing 100101 China

Funding

National Natural Science Foundation of China

References (72)

Show source-provided references
1. 10.1146/annurev.neuro.31.060407.12560610.1146/annurev.neuro.31.060407.125606 ↗
2. 10.1007/978-3-319-97911-3_110-110.1007/978-3-319-97911-3_110-1 ↗
3. 10.1038/nn.452410.1038/nn.4524 ↗
4. 10.1038/nrg341310.1038/nrg3413 ↗
5. 10.1016/j.ajhg.2016.08.00110.1016/j.ajhg.2016.08.001 ↗
6. 10.1016/j.neuron.2009.08.02110.1016/j.neuron.2009.08.021 ↗
7. 10.1016/j.stemcr.2019.05.01010.1016/j.stemcr.2019.05.010 ↗
8. 10.1242/dev.14110110.1242/dev.141101 ↗
9. 10.1038/nn.436010.1038/nn.4360 ↗
10. 10.1177/107385841774783910.1177/1073858417747839 ↗
11. 10.7554/eLife.2457010.7554/eLife.24570 ↗
12. 10.1016/j.stemcr.2022.07.00410.1016/j.stemcr.2022.07.004 ↗
13. 10.1002/bies.20090017010.1002/bies.200900170 ↗
14. 10.1016/j.devcel.2009.12.01710.1016/j.devcel.2009.12.017 ↗
15. 10.1186/s13059-019-1896-810.1186/s13059-019-1896-8 ↗
16. 10.1016/j.biopha.2019.10977410.1016/j.biopha.2019.109774 ↗
17. 10.1038/nrendo.2016.13810.1038/nrendo.2016.138 ↗
18. 10.1038/nm.417910.1038/nm.4179 ↗
19. 10.1016/j.bbrc.2016.03.15010.1016/j.bbrc.2016.03.150 ↗
20. 10.1242/dev.18135410.1242/dev.181354 ↗
21. 10.1126/sciadv.aaz647710.1126/sciadv.aaz6477 ↗
22. 10.1093/cercor/bhx28910.1093/cercor/bhx289 ↗
23. 10.1016/S0070-2153(05)69005-910.1016/S0070-2153(05)69005-9 ↗
24. 10.1101/gad.246603.11410.1101/gad.246603.114 ↗
25. 10.1038/ncomms1475810.1038/ncomms14758 ↗
26. 10.1002/gene.1000810.1002/gene.10008 ↗
27. 10.1101/gad.246603.11410.1101/gad.246603.114 ↗
28. 10.1007/s12311-015-0724-210.1007/s12311-015-0724-2 ↗
29. 10.1016/j.mcn.2010.05.00110.1016/j.mcn.2010.05.001 ↗
30. 10.1523/JNEUROSCI.2532-06.200610.1523/JNEUROSCI.2532-06.2006 ↗
31. 10.1016/j.ccr.2008.07.00310.1016/j.ccr.2008.07.003 ↗
32. 10.1038/3657910.1038/36579 ↗
33. 10.1007/s00441-009-0826-610.1007/s00441-009-0826-6 ↗
34. 10.1038/s10038-017-0391-x10.1038/s10038-017-0391-x ↗
35. 10.1002/ajmg.c.3175410.1002/ajmg.c.31754 ↗
36. 10.1002/ajmg.a.3566010.1002/ajmg.a.35660 ↗
37. 10.1016/B978-0-12-380916-2.00008-510.1016/B978-0-12-380916-2.00008-5 ↗
38. 10.1128/MCB.05718-1110.1128/MCB.05718-11 ↗
39. 10.1016/j.intimp.2023.11133410.1016/j.intimp.2023.111334 ↗
40. 10.1038/918910.1038/9189 ↗
41. 10.1038/nature0839810.1038/nature08398 ↗
42. 10.1016/j.devcel.2010.09.01110.1016/j.devcel.2010.09.011 ↗
43. 10.1038/ncomms642510.1038/ncomms6425 ↗
44. 10.1016/j.mcn.2017.11.00510.1016/j.mcn.2017.11.005 ↗
45. 10.1038/nm.282810.1038/nm.2828 ↗
46. 10.1038/nn.356410.1038/nn.3564 ↗
47. 10.1016/j.tins.2011.01.00210.1016/j.tins.2011.01.002 ↗
48. 10.1111/cpr.1210610.1111/cpr.12106 ↗
49. 10.1186/1868-7083-4-2110.1186/1868-7083-4-21 ↗
50. 10.1186/1756-6606-5-4210.1186/1756-6606-5-42 ↗
51. 10.1038/nature2326210.1038/nature23262 ↗
52. 10.1186/s13059-017-1317-910.1186/s13059-017-1317-9 ↗
53. 10.1038/s41576-020-0245-910.1038/s41576-020-0245-9 ↗
54. 10.1101/gad.318675.11810.1101/gad.318675.118 ↗
55. 10.7554/eLife.4425810.7554/eLife.44258 ↗
56. 10.1038/cr.2017.8210.1038/cr.2017.82 ↗
57. 10.1038/s41401-023-01145-z10.1038/s41401-023-01145-z ↗
58. 10.1038/s41467-021-26901-910.1038/s41467-021-26901-9 ↗
59. 10.4161/epi.7.2.1891010.4161/epi.7.2.18910 ↗
60. 10.1016/j.neuron.2009.08.01510.1016/j.neuron.2009.08.015 ↗
61. 10.1016/j.stemcr.2017.05.00710.1016/j.stemcr.2017.05.007 ↗
62. 10.1038/nmeth.419710.1038/nmeth.4197 ↗
63. 10.12688/f1000research.7563.110.12688/f1000research.7563.1 ↗
64. 10.1038/nprot.2008.21110.1038/nprot.2008.211 ↗
65. 10.1038/nmeth.192310.1038/nmeth.1923 ↗
66. 10.12688/f1000research.15931.110.12688/f1000research.15931.1 ↗
67. 10.1038/nprot.2012.10110.1038/nprot.2012.101 ↗
68. 10.1186/gb-2012-13-3-r1610.1186/gb-2012-13-3-r16 ↗
69. 10.1111/jcmm.1265510.1111/jcmm.12655 ↗
70. 10.1093/nar/gkw25710.1093/nar/gkw257 ↗
71. 10.1016/j.bbr.2012.07.02410.1016/j.bbr.2012.07.024 ↗
72. 10.1038/ncomms1204710.1038/ncomms12047 ↗