journal article·2024-01Open access

A computational mechanics model for producing molecular assembly using molecularly woven pantographs

Byeonghwa Goh, Joonmyung Choi

Cell Reports Physical Science· Volume 5· Issue 1

Abstract

The weave-based interlocking design has received considerable attention for preparing the patterned linkage of molecules via formation and dissociation of highly non-covalent bonds among molecules. Here, we design the mechanical behavior of a nanoscale pantograph structure in which tetraphenylethene derivatives are interlocked in the form of warp and weft strands in silico. The kinetics related to the width strain of the entire film are evaluated by quantifying the molecular-scale tilting deformation between the warp and weft strands following the inflow and outflow of methanol. The mechanical stiffness, structural durability, and deformation repeatability of the system caused by tightly interlocked molecular strands are investigated together. The cucurbituril hybrids present on the interface are successfully self-assembled into molecular bearings using the in-plane working stroke of the pantograph film.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Force Microscopy Techniques and Applications · Molecular Junctions and Nanostructures · Supramolecular Chemistry and Complexes

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (53)

Show source-provided references
1. The augmentation of nanotechnology era: A concise review on fundamental concepts of nanotechnology and applications in material science and technology10.1016/j.rechem.2022.100633 ↗
2. Chemical fuels for molecular machinery10.1038/s41557-022-00970-9 ↗
3. Molecular robots with sensors and intelligence10.1021/ar400318d ↗
4. A printable active network actuator built from an engineered biomolecular motor10.1038/s41563-021-00969-6 ↗
5. Docking of antibodies into the cavities of DNA origami structures10.1002/ange.201706765 ↗
6. Mechanochemical release of non-covalently bound guests from a polymer-decorated supramolecular cage10.1002/anie.202102383 ↗
7. Transamidation-driven molecular pumps10.1021/jacs.2c06807 ↗
8. A nanoparticle-DNA assembled nanorobot powered by charge-tunable quad-nanopore system10.1021/acsnano.0c05779 ↗
9. Rotaxane-based molecular muscles10.1021/ar500138u ↗
10. Pumping between phases with a pulsed-fuel molecular ratchet10.1038/s41565-022-01097-1 ↗
11. Controlling factors in the synthesis of cucurbituril and its homologues10.1021/jo015897c ↗
12. A cucurbituril-based gyroscane: a new supramolecular form10.1002/1521-3757(20020118)114:2<285::AID-ANGE285>3.0.CO;2-6 ↗
13. Molecular gears: from solution to surfaces10.1002/chem.202101489 ↗
14. A platinum(II) molecular hinge with motions visualized by phosphorescence changes10.1073/pnas.1908034116 ↗
15. High-yielding flow synthesis of a macrocyclic molecular hinge10.1021/jacs.1c02891 ↗
16. A large-scale array of ordered graphene-sandwiched chambers for quantitative liquid-phase transmission electron microscopy10.1002/adma.202002889 ↗
17. Reversible disorder-order transitions in atomic crystal nucleation10.1126/science.aaz7555 ↗
18. Microfluidic affinity selection of active SARS-CoV-2 virus particles10.1126/sciadv.abn9665 ↗
19. Weaving of organic threads into a crystalline covalent organic framework10.1126/science.aad4011 ↗
20. Woven polymer networks via the topological transformation of a [2]catenane10.1021/jacs.0c06416 ↗
21. Robust and dynamic polymer networks enabled by woven crosslinks10.1002/anie.202210078 ↗
22. 3D covalent organic frameworks of interlocking 1D square ribbons10.1021/jacs.8b12177 ↗
23. Configurational entropy driven high-pressure behavior of a flexible Metal–organic framework (MOF)10.1002/anie.202011004 ↗
24. Robust thermoelastic microactuator based on an organic molecular crystal10.1038/s41467-019-12601-y ↗
25. Multiple yet switchable hydrogen-bonded organic frameworks with white-light emission10.1038/s41467-022-29565-1 ↗
26. Molecular weaving10.1038/s41563-021-01179-w ↗
27. Dynamic molecular weaving in a two-dimensional hydrogen-bonded organic framework10.1016/j.chempr.2021.02.017 ↗
28. A solid transformation into carboxyl dimers based on a robust hydrogen-bonded organic framework for propyne/propylene separation10.1002/anie.202110057 ↗
29. Dynamic network of intermolecular interactions in metal-organic frameworks functionalized by molecular machines10.1126/sciadv.abn4426 ↗
30. Simulating a chemically fueled molecular motor with nonequilibrium molecular dynamics10.1038/s41467-022-29393-3 ↗
31. Semi-ionic model for metal oxides and their interfaces with organic molecules10.1021/jp071775y ↗
32. Simulation of metal–organic framework self-assembly10.1039/C5CP00379B ↗
33. Probing molecular mechanisms of self-assembly in metal−organic frameworks10.1021/acsnano.6b05444 ↗
34. Understanding metal−organic framework nucleation from a solution with evolving graphs10.1021/jacs.1c13508 ↗
35. COMPASS: an ab initio force-field optimized for condensed-phase applications overview with details on alkane and benzene compounds10.1021/jp980939v ↗
36. Controllable synthesis of ZnO nanoflakes with exposed (1010¯) for enhanced gas sensing performance10.1021/jp404329q ↗
37. Ewald summation for molecular simulations10.1021/acs.jctc.5b00093 ↗
38. Sensitive detection of competitive molecular adsorption by surface-enhanced X-ray scattering spectroscopy10.1021/acs.langmuir.7b01186 ↗
39. Polymorphism, pseudo-polymorphism, and conformerism in the crystal structure of piperazine-N,N′-bis(N,O-diphenyl phosphoramidate)10.1039/C7CE00039A ↗
40. Encapsulation of isolated luminophores within supramolecular cages10.1002/anie.201707097 ↗
41. Intermediate-sized molecular sieving of styrene from larger and smaller analogues10.1038/s41563-019-0427-z ↗
42. Microporous polymers with cascaded cavities for controlled transport of small gas molecules10.1126/sciadv.abi9062 ↗
43. Improving the surface hydrophobicity by the solvent effect to reduce the water erosion of the CL-20/TNT cocrystal explosive10.1039/D1CP03317D ↗
44. An assessment of lattice energy minimization for the prediction of molecular organic crystal structures10.1021/cg0498148 ↗
45. Fast parallel algorithms for short-range molecular dynamics10.1006/jcph.1995.1039 ↗
46. Pressure tensor of partial-charge and point-dipole lattices with bulk and surface geometries10.1103/PhysRevB.49.755 ↗
47. Generalized type III internal stress from interfaces, triple junctions and other microstructural components in nanocrystalline materials10.1016/j.actamat.2013.04.048 ↗
48. Continuum interpretation of virial stress in molecular simulations10.1016/j.ijsolstr.2008.03.016 ↗
49. A spatial upscaling method for describing the three-body potential of a diamond lattice structure10.1016/j.apm.2022.04.011 ↗
50. All-atom empirical potential for molecular modeling and dynamics studies of proteins10.1021/jp973084f ↗
51. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes10.1016/0021-9991(77)90098-5 ↗
52. Solvent-accessible surfaces of proteins and nucleic acids10.1126/science.6879170 ↗
53. Visualization and analysis of atomistic simulation data with OVITO–the Open Visualization Tool10.1088/0965-0393/18/1/015012 ↗