journal article·2022-09Open access

Mechanosensing view of SARS-CoV-2 infection by a DNA nano-assembly

Jialu Zhang, Yihao Huang, Miao Sun, Ting Song, Shuang Wan, Chaoyong Yang, Yanling Song

Cell Reports Physical Science· Volume 3· Issue 9

Abstract

The mechanical force between a virus and its host cell plays a critical role in viral infection. However, characterization of the virus-cell mechanical force at the whole-virus level remains a challenge. Herein, we develop a platform in which the virus is anchored with multivalence-controlled aptamers to achieve transfer of the virus-cell mechanical force to a DNA tension gauge tether (Virus-TGT). When the TGT is ruptured, the complex of binding module-virus-cell is detached from the substrate, accompanied by decreased host cell-substrate adhesion, thus revealing the mechanical force between whole-virus and cell. Using Virus-TGT, direct evidence about the biomechanical force between SARS-CoV-2 and the host cell is obtained. The relative mechanical force gap (<10 pN) at the cellular level between the wild-type virus to cell and a variant virus to cell is measured, suggesting a possible positive correlation between virus-cell mechanical force and infectivity. Overall, this strategy provides a new perspective to probe the SARS-CoV-2 mechanical force.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · RNA Interference and Gene Delivery · Bacteriophages and microbial interactions

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (48)

Show source-provided references
1. Structural basis for the recognition of SARS-CoV-2 by full-length human ACE210.1126/science.abb2762 ↗
2. Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion10.1038/s41586-020-2772-0 ↗
3. Structure, function, and antigenicity of the SARS-CoV-2 spike glycoprotein10.1016/j.cell.2020.02.058 ↗
4. Conformational dynamics of the Beta and Kappa SARS-CoV-2 spike proteins and their complexes with ACE2 receptor revealed by cryo-EM10.1038/s41467-021-27350-0 ↗
5. Mechanisms of SARS-CoV-2 entry into cells10.1038/s41580-021-00418-x ↗
6. Mechanical activation of spike fosters SARS-CoV-2 viral infection10.1038/s41422-021-00558-x ↗
7. Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation10.1126/science.abb2507 ↗
8. Structural and functional analysis of the D614G SARS-CoV-2 spike protein variant10.1016/j.cell.2020.09.032 ↗
9. Molecular interaction and inhibition of SARS-CoV-2 binding to the ACE2 receptor10.1038/s41467-020-18319-6 ↗
10. Biomechanical characterization of SARS-CoV-2 spike RBD and human ACE2 protein-protein interaction10.1016/j.bpj.2021.02.007 ↗
11. N501Y mutation of spike protein in SARS-CoV-2 strengthens its binding to receptor ACE210.7554/eLife.69091 ↗
12. Molecular insights into receptor binding energetics and neutralization of SARS-CoV-2 variants10.1038/s41467-021-27325-1 ↗
13. A tethered ligand assay to probe SARS-CoV-2:ACE2 interactions10.1073/pnas.2114397119 ↗
14. Visualizing intercellular tensile forces by DNA-based membrane molecular probes10.1021/jacs.7b11176 ↗
15. Surface chemistry can unlock drivers of surface stability of SARS-CoV-2 in a variety of environmental conditions10.1016/j.chempr.2020.08.001 ↗
16. Atomic force microscopy-based characterization and design of biointerfaces10.1038/natrevmats.2017.8 ↗
17. DNA-based nanoparticle tension sensors reveal that T-cell receptors transmit defined pN forces to their antigens for enhanced fidelity10.1073/pnas.1600163113 ↗
18. Platelet integrins exhibit anisotropic mechanosensing and harness piconewton forces to mediate platelet aggregation10.1073/pnas.1710828115 ↗
19. DNA mechanotechnology reveals that integrin receptors apply pN forces in podosomes on fluid substrates10.1038/s41467-019-12304-4 ↗
20. DNA nanotechnology as an emerging tool to study mechanotransduction in living systems10.1002/smll.201900961 ↗
21. A reversible shearing DNA probe for visualizing mechanically strong receptors in living cells10.1038/s41556-021-00691-0 ↗
22. Mechanically triggered hybridization chain reaction10.1002/anie.202107660 ↗
23. Multivalent 9-O-Acetylated-sialic acid glycoclusters as potent inhibitors for SARS-CoV-2 infection10.1038/s41467-022-30313-8 ↗
24. Aptamer blocking strategy inhibits SARS-CoV-2 virus infection10.1002/anie.202100225 ↗
25. DNA framework-programmed cell capture via topology-engineered receptor-ligand interactions10.1021/jacs.9b11015 ↗
26. Defining single molecular forces required to activate integrin and notch signaling10.1126/science.1231041 ↗
27. DNA framework-based topological cell sorters10.1002/anie.202002020 ↗
28. Structural basis of receptor recognition by SARS-CoV-210.1038/s41586-020-2179-y ↗
29. Membrane fusion and immune evasion by the spike protein of SARS-CoV-2 Delta variant10.1126/science.abl9463 ↗
30. The impact of mutations in SARS-CoV-2 spike on viral infectivity and antigenicity10.1016/j.cell.2020.07.012 ↗
31. SARS-CoV-2 spike-protein D614G mutation increases virion spike density and infectivity10.1038/s41467-020-19808-4 ↗
32. Coarse-grained modeling of coronavirus spike proteins and ACE2 receptors10.3389/fphy.2021.680983 ↗
34. Designer DNA architecture offers precise and multivalent spatial pattern-recognition for viral sensing and inhibition10.1038/s41557-019-0369-8 ↗
35. Binding to nanopatterned antigens is dominated by the spatial tolerance of antibodies10.1038/s41565-018-0336-3 ↗
36. Dissection of nanoconfinement and proximity effects on the binding events in DNA origami nanocavity10.1093/nar/gkab1298 ↗
37. Discovery and characterization of spike N-terminal domain-binding aptamers for rapid SARS-CoV-2 detection10.1002/anie.202107730 ↗
38. Diverse high-affinity DNA aptamers for wild-type and B.1.1.7 SARS-CoV-2 spike proteins from a pre-structured DNA library10.1093/nar/gkab574 ↗
39. Evolution of abiotic cubane chemistries in a nucleic acid aptamer allows selective recognition of a malaria biomarker10.1073/pnas.2003267117 ↗
40. Direct detection of human adenovirus or SARS-CoV-2 with ability to inform infectivity using DNA aptamer-nanopore sensors10.1126/sciadv.abh2848 ↗
41. DNA nanostructures at the interface with biology10.1016/j.chempr.2018.02.005 ↗
42. Programmable multivalent DNA-origami tension probes for reporting cellular traction forces10.1021/acs.nanolett.8b01374 ↗
43. DNA nanolithography enables a highly ordered recognition interface in a microfluidic chip for the efficient capture and release of circulating tumor cells10.1002/anie.202005974 ↗
44. Tailoring patchy nanoparticle design to modulate serum albumin adsorption and membrane interaction10.1039/D0SM01889A ↗
45. Coarse-grained molecular dynamics simulation of dendrimer transmembrane transport with temperature-dependent membrane phase states10.1016/j.ijheatmasstransfer.2020.119797 ↗
46. Entry dynamics of single ebola virus revealed by force tracing10.1021/acsnano.0c01739 ↗
47. Structures and distributions of SARS-CoV-2 spike proteins on intact virions10.1038/s41586-020-2665-2 ↗
48. Fluidic multivalent membrane nanointerface enables synergetic enrichment of circulating tumor cells with high efficiency and viability10.1021/jacs.9b13782 ↗