Reversible peptide tagging system to regulate enzyme activity
Source abstract
Abstract
Peptide tagging systems are widely used across scientific fields. Here, to obtain a peptide tagging system with high covalent linkage efficiency, we rationally designed the ReverseTag/ReverseCatcher system, building upon the ester-bond-based peptide tagging system Cpe0147 439 −563 /Cpe0147 565−587 . Our optimized system exhibits a second-order rate constant of 1.92 ± 0.002 × 10 4 M −1 s −1 , a 21.7-fold increase over the wild-type system. The ester bond between ReverseTag and ReverseCatcher demonstrates exceptional mechanical stability, withstanding forces over 2 nN, while remaining hydrolyzable under alkaline conditions with significant energy input. To leverage this for enzymatic catalysis, we introduced a T11S mutation into ReverseCatcher, allowing pH-controlled reversible bond formation and cleavage. Applying this strategy to exo -inulinase (EXINU) enables precise, pH-dependent enzyme activity control. This sustainable method for modulating enzyme-catalyzed reactions offers broad biotechnological potential.
Source: openalex_inverted_index · Quality: baseline
Research context
OpenAlex topics: Biochemical and Structural Characterization · Glycosylation and Glycoproteins Research · Chemical Synthesis and Analysis
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
References (30)
Show source-provided references
1. Yet more intramolecular cross-links in Gram-positive surface proteins10.1073/pnas.1322482111 ↗
2. The reaction mechanism of the internal thioester in the human complement component C410.1038/379177a0 ↗
3. Mechanical forces regulate the reactivity of a thioester bond in a bacterial adhesin10.1074/jbc.M117.777466 ↗
4. An internal thioester in a pathogen surface protein mediates covalent host binding10.7554/eLife.06638 ↗
5. Stabilizing isopeptide bonds revealed in gram-positive bacterial pilus structure10.1126/science.1145806 ↗
6. Isopeptide bonds block the mechanical extension of pili in pathogenic Streptococcus pyogenes10.1074/jbc.M110.102962 ↗
7. Autocatalytically generated Thr-Gln ester bond cross-links stabilize the repetitive Ig-domain shaft of a bacterial cell surface adhesin10.1073/pnas.1316855111 ↗
8. An ester bond underlies the mechanical strength of a pathogen surface protein10.1038/s41467-021-25425-6 ↗
9. Peptide tag forming a rapid covalent bond to a protein, through engineering a bacterial adhesin10.1073/pnas.1115485109 ↗
10. Evolving Accelerated Amidation by SpyTag/SpyCatcher to Analyze Membrane Dynamics10.1002/anie.201707623 ↗
11. Supercharging SpyCatcher toward an intrinsically disordered protein with stimuli-responsive chemical reactivity10.1039/C7CC04507G ↗
12. An Intrinsically Disordered Peptide-Peptide Stapler for Highly Efficient Protein Ligation Both in Vivo and in Vitro10.1021/jacs.8b08250 ↗
13. Approaching infinite affinity through engineering of peptide-protein interaction10.1073/pnas.1909653116 ↗
14. Tailoring the Tag/Catcher System by Integrating Covalent Bonds and Noncovalent Interactions for Highly Efficient Protein Self-Assembly10.1021/acs.biomac.2c00765 ↗
15. Programmable polyproteams built using twin peptide superglues10.1073/pnas.1519214113 ↗
16. SnoopLigase Catalyzes Peptide-Peptide Locking and Enables Solid-Phase Conjugate Isolation10.1021/jacs.7b13237 ↗
17. DogCatcher allows loop-friendly protein-protein ligation10.1016/j.chembiol.2021.07.005 ↗
18. Synthetic Multienzyme Complexes Assembled on Virus-like Particles for Cascade Biosynthesis In Cellulo10.1021/acs.bioconjchem.0c00476 ↗
19. Highly efficiency production of D-allulose from inulin using curli fiber multi-enzyme cascade catalysis10.1016/j.ijbiomac.2023.124468 ↗
20. Programming an Orthogonal Self-Assembling Protein Cascade Based on Reactive Peptide-Protein Pairs for In Vitro Enzymatic Trehalose Production10.1021/acs.jafc.2c01118 ↗
21. SpyTag/SpyCatcher cyclization confers resilience to boiling on a mesophilic enzyme10.1002/anie.201402519 ↗
22. Rational Design of Spontaneous Self-Cyclization Enzymes In Vivo and In Vitro with Improved Thermal Tolerance and Activity10.1021/acscatal.4c00056 ↗
23. Improving the thermostability of trehalose synthase from Thermomonospora curvata by covalent cyclization using peptide tags and investigation of the underlying molecular mechanism10.1016/j.ijbiomac.2020.11.195 ↗
24. Harnessing ester bond chemistry for protein ligation10.1039/C6CC09899A ↗
25. Protein folding modulates the chemical reactivity of a Gram-positive adhesin10.1038/s41557-020-00586-x ↗
26. Molecular mechanism of extreme mechanostability in a pathogen adhesin10.1126/science.aar2094 ↗
27. Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation10.1016/S1097-2765(02)00496-3 ↗
28. Multiscale modeling of enzymes: QM-cluster, QM/MM, and QM/MM/MD: A tutorial review10.1002/qua.25558 ↗
29. Recent trends in quantum chemical modeling of enzymatic reactions10.1021/jacs.7b02671 ↗
30. The ORCA quantum chemistry program package