journal article·2026-10Open access

Deciphering proximal effects in substituted carbon nanozymes: Modulating ROS recognition and enhancing catalytic activity

Penghui Li, Xia Mu, Mingsong Shi, Huan Wang, Shuo Yin, Chuanqi Zhao

Carbon· Volume 260

Abstract

Proximal effects between functional groups in substituted carbon nanozymes can influence their activity towards reactive oxygen species (ROS). However, their molecular-level understanding remains limited, restricting full utilization. Herein, we combine molecular dynamics and quantum mechanics calculations to reveal how proximal functional group effects regulate ROS recognition and catalytic activity. The results demonstrate that each isolated functional group can provide a limited thermodynamically favorable region for ROS recognition, within which the binding strength can overcome the diffusion trends of ROS. The strongest ROS binding occurs when the -COO - group binds to H 2 O 2 ; however, H 2 O 2 enrichment is limited to within ∼12 Å, beyond which H 2 O 2 tends to diffuse away. Other ROS exhibit even weaker binding affinities and smaller recognition ranges, from 4 to 8 Å. Thus, proximity groups may regulate ROS recognition through steric hindrance, competitive binding, and cooperativity, while also inducing intramolecular hydrogen bonding that can either hinder or enhance ROS binding. QM calculations focus on the activity of -OH substituted nanozymes toward H 2 O 2 . Positioning -OH groups on rings with a single exposed C–H site results in higher activity than placement on rings with three exposed C–H sites, while appropriate positioning of additional proximal -OH groups further promotes H 2 O 2 activation, lowering the activation energy by 3.2 and 2.4 kcal/mol, respectively. These results indicate that designing nanozymes with synergistic proximal effects between functional groups is promising for enhancing their activity.
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Research context

OpenAlex topics: Advanced Nanomaterials in Catalysis · Carbon and Quantum Dots Applications · Nanoplatforms for cancer theranostics

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (47)

Show source-provided references
1. Nanozymes for nanohealthcare10.1038/s43586-024-00315-5 ↗
2. Nanomaterials with enzyme-like characteristics (nanozymes): next-generation artificial enzymes (II)10.1039/C8CS00457A ↗
3. Nanomaterials with enzyme-like characteristics (nanozymes): next-generation artificial enzymes10.1039/c3cs35486e ↗
4. Biosystem-Inspired engineering of nanozymes for biomedical applications
5. Carbon nanozymes: enzymatic properties, catalytic mechanism, and applications10.1002/anie.201712469 ↗
6. Deciphering the catalytic mechanism of superoxide dismutase activity of carbon dot nanozyme10.1038/s41467-023-35828-2 ↗
7. A nanoinhibitor targeting cGAS-STING pathway to reverse the homeostatic imbalance of inflammation in psoriasis
8. A MXene-derived redox homeostasis regulator perturbs the Nrf2 antioxidant program for reinforced sonodynamic therapy10.1039/D1SC07073H ↗
9. A nanocarbon-enabled hybridization strategy to construct pharmacologically cooperative therapeutics for augmented anticancer efficacy10.1039/D4SC05280C ↗
10. Curvature engineering enhances biocatalytic performance of active sites on nanocarbon for effective enzyme mimicking10.1002/smll.202510574 ↗
11. Nanozymes: classification, catalytic mechanisms, activity regulation, and applications10.1021/acs.chemrev.8b00672 ↗
12. Approaches to improving the selectivity of nanozymes10.1002/adma.202211288 ↗
13. Multienzyme-like nanozymes: regulation, rational design, and application10.1002/adma.202211210 ↗
14. Deciphering a nanocarbon-based artificial peroxidase: chemical identification of the catalytically active and substrate-binding sites on graphene quantum dots10.1002/anie.201500626 ↗
15. Specific oxygenated groups enriched graphene quantum dots as highly efficient enzyme mimics
16. Review of pharmacologically active carbon dots as versatile nanotherapeutics10.1021/acsanm.5c03216 ↗
17. Construction of PANoptosis-Inhibiting carbonized polymer dots via machine learning potential for mitigating Chemodrug-Induced nephrotoxicity
18. Construction of a microenvironment-responsive antibacterial hydrogel packed with immunomodulatory carbonized polymer dots for periodontitis treatment from multiple perspectives
19. Photoresponsive blood-derived protein hydrogels packed with bioactive carbon dots modulate mitochondrial homeostasis and reprogram metabolism for chronic wound healing in diabetes10.1021/acsami.5c00635 ↗
20. Bioactive carbon dots as antibacterial neural interface for neuron recording10.1016/j.cej.2026.174748 ↗
21. Renal clearable quantum dot–drug conjugates modulate labile iron species and scavenge free radicals for attenuating chemotherapeutic drug-induced acute kidney injury10.1021/acsami.3c00714 ↗
22. Targeted inhibition of pyroptosis via a carbonized nanoinhibitor for alleviating drug-induced acute kidney injury10.1039/D4TB00382A ↗
23. Unraveling the enzymatic activity of oxygenated carbon nanotubes and their application in the treatment of bacterial infections10.1021/acs.nanolett.7b05095 ↗
24. Phenol-like group functionalized graphene quantum dots structurally mimicking natural antioxidants for highly efficient acute kidney injury treatment10.1039/D0SC03246H ↗
25. 2005
26. Building water models: a different approach10.1021/jz501780a ↗
27. Frisch · 2019
28. Application of RESP charges to calculate conformational energies, hydrogen bond energies, and free energies of solvation10.1021/ja00074a030 ↗
29. Case · 2024
30. Development and testing of a general AMBER force field (GAFF)10.1002/jcc.20035 ↗
31. Standard free energy of binding from a one-dimensional potential of mean force10.1021/ct8002354 ↗
32. Particle mesh Ewald - an N.Log(N) method for Ewald Sums in large systems10.1063/1.464397 ↗
33. Bad seeds sprout perilous dynamics: stochastic thermostat induced trajectory synchronization in biomolecules10.1021/ct800573m ↗
34. Numerical-integration of cartesian equations of motion of a system with constraints - molecular-dynamics of N-alkanes10.1016/0021-9991(77)90098-5 ↗
35. Schrödinger · 2015
36. Universal solvation model based on the generalized born approximation with asymmetric descreening10.1021/ct900312z ↗
37. Universal solvation model based on Solute electron density and on a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions10.1021/jp810292n ↗
38. Zhao · Theor. Chem. Acc. · 2008 · 120 · 21510.1007/s00214-007-0310-x ↗
39. Accurate Coulomb-fitting basis sets for H to Rn10.1039/b515623h ↗
40. New Delhi Metallo-b-Lactamase I: substrate binding and catalytic mechanism10.1021/jp4065906 ↗
41. Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects10.1073/pnas.1005732107 ↗
42. Substrate recognition and processing by gamma-secretase10.1016/j.bbamem.2019.07.004 ↗
43. Substrate distortion in the Michaelis complex of bacillus 1,3-1,4-b-Glucanase. Insight from first principles molecular dynamics simulations10.1074/jbc.M507643200 ↗
44. Carbohydrate-protein interactions that drive processive polysaccharide translocation in enzymes revealed from a computational study of cellobiohydrolase processivity10.1021/ja504074g ↗
45. Tyrosine hydroxylase binds tetrahydrobiopterin cofactor with negative cooperativity, as shown by kinetic analyses and surface plasmon resonance detection10.1046/j.1432-1327.1999.00445.x ↗
46. Unfolding of CBP21, a lytic polysaccharide monooxygenase, without dissociation of its copper ion cofactor10.1002/bip.23339 ↗
47. Zinc as a cofactor for a cephalosporinase from Bacillus cereus10.1042/bj0980011C ↗