journal article·2026-05-01Open access

3D atomic structure determination with ultrashort-pulse MeV electron diffraction

Vincent Hennicke, Max Hachmann, Paul Benjamin Klar, Patrick Y. A. Reinke, Tim Pakendorf, Jan Meyer, Hossein Delsim-Hashemi, Miriam Barthelmess, Sreevidya Thekku Veedu, Pontus Fischer, Ana C. Rodrigues, Arlinda Qelaj, Alexandra Tolstikova, Oleksandr Yefanov, Juna Wernsmann, Francois Lemery, Robin Schubert, Iñaki de Diego, Stuart Hayes, Sebastian Günther, Sven Falke, Erik Fröjd, Aldo Mozzanica, Lukas Palatinus, Kai Rossnagel, Bernd Schmitt, Henry N. Chapman, Wim Leemans, Klaus Flöttmann, Alke Meents

IUCrJ· Volume 13· Issue 3

Abstract

Understanding structure at the atomic scale is fundamental for understanding the functioning and the development of materials with improved properties. Compared with other probes providing atomic resolution, electrons offer the strongest interaction in combination with minimal radiation damage, which makes them an ideal tool for investigating very small and radiation-sensitive samples [Henderson (1995), Q. Rev. Biophys. 28 , 171–193]. However, these benefits are often offset by the laborious preparation of nanometre-sized samples that are not visible using a light microscope, and the fact that experiments are largely restricted to ultra-high vacuum [Duyvesteyn et al. (2018), Proc. Natl Acad. Sci. USA 115 , 9569–9573; Gruene et al. (2021), Nat. Rev. Chem. 5 , 660–668]. Here, we report the successful implementation of MeV electron diffraction for ab initio 3D structure determination of the quasi-2D material muscovite and the quantum material 1 T -TaS 2 at atomic resolution. By employing ultrashort electron pulses from the REGAE (Relativistic electron gun for atomic exploration) accelerator, we obtained high-quality diffraction datasets suitable for structural refinements based on dynamical scattering theory, enabling precise localization of even hydrogen atoms. The increased penetration depth of MeV electrons significantly expands the applicable thickness range of samples, overcoming previous restrictions associated with traditional electron diffraction. These findings establish MeV electron diffraction as a viable approach for investigating a broad range of materials, including nanostructures and radiation-sensitive compounds, and open up new opportunities for in situ and time-resolved experiments [Chao et al. (2023), Chem. Rev. 123 , 8347–8394; Filippetto et al. (2022), Rev. Mod. Phys. 94 , 045004].
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Research context

OpenAlex topics: Advanced Electron Microscopy Techniques and Applications · Crystallography and Radiation Phenomena · Electron and X-Ray Spectroscopy Techniques

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References (54)

Show source-provided references
1. Bourhis · Acta Cryst. A · 2015 · 71 · 5910.1107/S2053273314022207 ↗
2. Bozzola, J. J. (1992). Electron Microscopy: Principles and Techniques for Biologists. Boston: Jones and Bartlett Publishers.
3. Brázda · IUCrJ · 2022 · 9 · 73510.1107/S2052252522007904 ↗
4. Bücker · Nat. Commun. · 2020 · 11 · 99610.1038/s41467-020-14793-0 ↗
5. Burkhardt · Eur. Phys. J. Plus · 2016 · 131 · 5610.1140/epjp/i2016-16056-0 ↗
6. Burla · J. Appl. Cryst. · 2015 · 48 · 30610.1107/S1600576715001132 ↗
7. Catti · Eur. J. Mineral. · 1994 · 6 · 17110.1127/ejm/6/2/0171 ↗
8. Chao · Chem. Rev. · 2023 · 123 · 834710.1021/acs.chemrev.2c00880 ↗
9. Cosslett · Q. Rev. Biophys. · 1969 · 2 · 9510.1017/S0033583500000925 ↗
10. de la Flor · J. Appl. Cryst. · 2016 · 49 · 65310.1107/S1600576716002569 ↗
11. Duyvesteyn · Proc. Natl Acad. Sci. USA · 2018 · 115 · 956910.1073/pnas.1809978115 ↗
12. Filippetto · Rev. Mod. Phys. · 2022 · 94 · 04500410.1103/RevModPhys.94.045004 ↗
13. Fröjdh · J. Instrum. · 2022 · 17 · C1200410.1088/1748-0221/17/12/C12004 ↗
14. Gatta · Am. Mineral. · 2011 · 96 · 3410.2138/am.2011.3595 ↗
15. Gemmi · ACS Cent. Sci. · 2019 · 5 · 131510.1021/acscentsci.9b00394 ↗
16. Gruene · Nat. Rev. Chem. · 2021 · 5 · 66010.1038/s41570-021-00302-4 ↗
17. Günther · Science · 2021 · 372 · 64210.1126/science.abf7945 ↗
18. Hachmann · Nucl. Instrum. Methods Phys. Res. A · 2016 · 829 · 31810.1016/j.nima.2016.01.065 ↗
19. Haupt · Phys. Rev. Lett. · 2016 · 116 · 01640210.1103/PhysRevLett.116.016402 ↗
20. Henderson · Q. Rev. Biophys. · 1995 · 28 · 17110.1017/S003358350000305X ↗
21. Herschlag · Biochemistry · 2018 · 57 · 333810.1021/acs.biochem.8b00217 ↗
22. Holton · J. Synchrotron Rad. · 2009 · 16 · 13310.1107/S0909049509004361 ↗
23. Ishikawa · Science · 2015 · 350 · 150110.1126/science.aab3480 ↗
24. Ito · CrystEngComm · 2021 · 23 · 862210.1039/D1CE01172C ↗
25. Kabsch · Acta Cryst. D · 2010 · 66 · 12510.1107/S0907444909047337 ↗
26. Kawasaki · J. Electron Microsc. · 2000 · 49 · 71110.1093/oxfordjournals.jmicro.a023863 ↗
27. Khouchen · Acta Cryst. A · 2023 · 79 · 42710.1107/S2053273323005053 ↗
28. Klar · Nat. Chem. · 2023 · 15 · 84810.1038/s41557-023-01186-1 ↗
29. Kogar · Nat. Phys. · 2020 · 16 · 15910.1038/s41567-019-0705-3 ↗
30. Leonarski · Nat. Methods · 2018 · 15 · 79910.1038/s41592-018-0143-7 ↗
31. Liang · Can. Mineral. · 1998 · 36 · 1017
32. Lin · Science · 2021 · 374 · 9210.1126/science.abg3091 ↗
33. Mahnke, C., Grosse-Wortmann, U., Hachmann, M., Hennicke, V., Li, C., Meyer, J., Pakendorf, T., Flöttmann, K., Meents, A. & Hartl, I. (2024). EPJ Web Conf. 307, 02030.10.1051/epjconf/202430702030 ↗
34. Manz · Faraday Discuss. · 2015 · 177 · 46710.1039/C4FD00204K ↗
35. Manzeli · Nat. Rev. Mater. · 2017 · 2 · 1703310.1038/natrevmats.2017.33 ↗
36. Mozzanica · Synchrotron Radiat. News · 2018 · 31 · 1610.1080/08940886.2018.1528429 ↗
37. Nannenga · Nat. Methods · 2014 · 11 · 92710.1038/nmeth.3043 ↗
38. Novoselov · Phys. Scr. · 2012 · T146 · 01400610.1088/0031-8949/2012/T146/014006 ↗
39. Nunes · Struct. Dyn. · 2020 · 7 · 02430110.1063/1.5144518 ↗
40. Palatinus · Science · 2017 · 355 · 16610.1126/science.aak9652 ↗
41. Palatinus · Acta Cryst. B · 2019 · 75 · 51210.1107/S2052520619007534 ↗
42. Palatinus · J. Appl. Cryst. · 2007 · 40 · 78610.1107/S0021889807029238 ↗
43. Palatinus · Acta Cryst. B · 2015 · 71 · 74010.1107/S2052520615017023 ↗
44. Palatinus · Acta Cryst. A · 2015 · 71 · 23510.1107/S2053273315001266 ↗
45. Petříček · Z. Kristallogr. Cryst. Mater. · 2023 · 238 · 27110.1515/zkri-2023-0005 ↗
46. Redford · J. Instrum. · 2018 · 13 · C0102710.1088/1748-0221/13/01/C01027 ↗
47. Sheldrick · Acta Cryst. A · 2008 · 64 · 11210.1107/S0108767307043930 ↗
48. Sheldrick · Acta Cryst. C · 2015 · 71 · 310.1107/S2053229614024218 ↗
49. Simoncic · Acta Cryst. E · 2023 · 79 · 41010.1107/S2056989023003109 ↗
50. Spijkerman · Phys. Rev. B · 1997 · 56 · 1375710.1103/PhysRevB.56.13757 ↗
51. Stokes · Acta Cryst. A · 2011 · 67 · 4510.1107/S0108767310042297 ↗
52. van Smaalen · Acta Cryst. A · 2013 · 69 · 7510.1107/S0108767312041657 ↗
53. Weathersby · Rev. Sci. Instrum. · 2015 · 86 · 07370210.1063/1.4926994 ↗
54. Zeitler, B., Floettmann, K. & Grüner, F. (2015). Phys. Rev. ST Accel. Beams 18, 120102.10.1103/PhysRevSTAB.18.120102 ↗