journal article·2026-02-05Open access

Porosity and Permeability Estimations from X-Ray Tomography Images and Data Using a Deep Learning Approach

Edwar Herrera, Oriol Oms, Eduard Remacha

Applied Sciences· Volume 16· Issue 3

Abstract

This work presents a novel deep learning workflow for estimating porosity and permeability from combined data, where numerical variables such as high-resolution bulk density (RHOB) and photoelectric factor (PEF) data are integrated with X-ray computed tomography (X-CT) image data, using a dual-energy X-CT approach (DECT). Convolutional neural networks (CNNs) were calibrated with routine core analysis (RCAL) laboratory measurements from one well from Sinú-San Jacinto Basin (Colombia). The CNN architecture combines two main branches: An image branch, in which a CNN extracts spatial features from normalized X-CT sections using 3 × 3 convolution layers, ReLU activation, batch normalization, and maxPooling, and a numerical branch, which processes the input vectors corresponding to RHOB and PEF using fully connected dense layers and dropout regularization. Both branches are concatenated in a fusion layer, from which the model’s final predictions are made. Results indicate a strong correlation between porosity, permeability, RHOB and PEF logs, and CT images. The porosity model achieved excellent predictive performance, with an R2 = 0.996, MAE = 3.96 × 10−3, MSE = 3.82 × 10−5, and 0.064 maximum error. The permeability model also performed well, with a linear R2 = 0.983, though metrics reflected the wide dynamic range of permeability. Consequently, artificial neural networks (ANNs) can accurately predict porosity and permeability at various depths where no corresponding laboratory data exists, demonstrating excellent predictive capabilities over several rock intervals, in a high vertical resolution because of X-CT data scale (0.625 mm).
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Hydrocarbon exploration and reservoir analysis · Enhanced Oil Recovery Techniques · Groundwater flow and contamination studies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

School of Petroleum Engineering, Faculty of Physicochemical Engineering, Industrial University of Santander, Bucaramanga 680002, Colombia

Department of Geology, Autonomous University of Barcelona, 08193 Barcelona, Spain

References (36)

Show source-provided references
1. High-resolution X-ray computed tomography in geosciences: A review of the current technology and applications10.1016/j.earscirev.2013.04.003 ↗
2. Characterization and Analysis of Porosity and Pore Structures10.2138/rmg.2015.80.04 ↗
3. Caracterización estática de rocas por medio de tomografía computarizada de rayos-X TAC
4. Siddiqui, S., and Khamees, A. (2004, January 26–29). Dual-energy CT-scanning applications in rock characterization. Proceedings of the SPE Annual Technical Conference and Exhibition, Houston, TX, USA.10.2118/90520-MS ↗
5. Tiab, D., and Donaldson, E.C. (2003). Petrophysics: Theory and Practice of Measuring Reservoir Rock and Fluid Transport Properties, Gulf Professional Publishing.
6. Ellis, D.V., and Singer, J.M. (2007). Well Logging for Earth Scientists, Springer. [2nd ed.].10.1007/978-1-4020-4602-5 ↗
7. Schlumberger (1991). Log Interpretation Principles/Applications, Schlumberger Wireline & Testing.
8. Edwar, H., Oms, O., and Eduard, R. (2025). Integration of Qualitative and Quantitative Approaches for 3D Geostatistical Modeling of the Ciénaga De Oro Formation, Southern Sinú-San Jacinto Basin, Colombia. Appl. Sci., 15.10.3390/app152312374 ↗
9. Relationship of Porosity and Permeability to Various parameters Derived from Mercury Injection—Capillary Pressure Curves for Sandstone
10. Amaefule, J., Altunbay, M., and Tiab, D. (1993, January 3–6). Enhanced Reservoir Description: Using Core and Log Data to Identify Hydraulic (Flow) Units and Predict Permeability in Uncored Intervals/Wells. Proceedings of the SPE Annual Technical Conference and Exhibition, Houston, TX, USA.10.2118/26436-MS ↗
11. Serra, O. (2008). Well Logging and Reservoir Evaluation, Editions Technip.
12. Impacts of mineralogy on petrophysical properties10.1007/s11242-022-01829-w ↗
13. Dual- and multi-energy CT: Principles, technical approaches, and clinical applications10.1148/radiol.2015142631 ↗
14. Application of dual-energy CT scan to analyse and predict rock properties in core analysis
15. Petrophysical characterization and porosity–permeability log calculation by Dual-Energy CT scan: Morro do Chaves Formation, Sergipe-Alagoas Basin, Brazil
16. Akin, S., Demiral, B., and Okandan, E. (1996). A novel method of porosity measurement utilizing computerized tomography. In Situ, 347–365. Available online: https://open.metu.edu.tr/handle/11511/54953.
17. Spontaneous imbibition characteristics of diaotomite10.1016/S0920-4105(00)00010-3 ↗
18. Computed tomography in petroleum engineering research
19. Withjack, E.M., Devier, C., and Michael, G. (2003, January 19–24). The Role of X-Ray Computed Tomography in Core Analysis. Proceedings of the SPE Western Regional/AAPG Pacific Section Joint Meeting, Long Beach, CA, USA.10.2118/83467-MS ↗
20. White, A.C., Molnar, D., Mohaghegh, S., Ameri, S., and Esposito, P. (1995, January 18–20). The Application of ANN for Zone Identification in a Complex Reservoir. Proceedings of the SPE Eastern Regional Conference & Exhibition, Morgantown, WV, USA.10.2523/30977-MS ↗
21. Sun, Q., Eissa, M., Castagna, J., Dario, S., Sun, S., and Decker, C. (2001, January 9–14). Porosity from Artificial Neural Network Inversion for Bermejo Field, Ecuador. Proceedings of the SEG Int’l Exposition and Annual Meeting, San Antonio, TX, USA.10.1190/1.1816735 ↗
22. Prediction of porosity in crystalline rocks using artificial neural networks: An example from the Chinese Continental Scientific Drilling Main Hole10.1007/s11200-013-0993-5 ↗
23. A general approach for porosity estimation using artificial neural network method: A case study from Kansas gas field10.1007/s11200-015-0820-2 ↗
24. Xu, H., Li, K., Shan, P., Wu, X., Zhang, S., Wang, Z., Liu, C., Yan, Z., Wu, L., and Wang, H. (2025). Automatic Picking Method for the First Arrival Time of Microseismic Signals Based on Fractal Theory and Feature Fusion. Fractal Fract., 9.10.3390/fractalfract9110679 ↗
25. Energy dissimilation characteristics and shock mechanism of coal-rock mass induced in steeply-inclined mining: Comparison based on physical simulation and numerical calculation10.1007/s11440-022-01617-2 ↗
26. Porosity prediction from X-ray computed tomography logs (RHOB and PEF) using artificial neural networks10.18273/revbol.v42n3-2020006 ↗
27. Herrera Otero, E.H., Oms Llobet, J.O., and Remacha Grau, E. (2026). Integration Between Well Logs and CT Information to Estimate Petrophysical Properties Through a Neural Network Model. Geosciences, 16.10.3390/geosciences16010021 ↗
28. Estimating permeability of 3D micro-CT images by physics-informed CNNs based on DNS
29. Predicting permeability from 3D rock images based on CNN with physical information10.1016/j.jhydrol.2022.127473 ↗
30. Segmentation of X-ray computed tomography images of porous materials: A crucial step for characterization and quantitative analysis of pore structures10.1029/2009WR008087 ↗
31. UNAL (2004). Química Analítica II, ley de Bourguer-Lambert-Beer. Desviaciones a la ley de Beer. Errores en Espectrofotometría, UNAL.
32. Hubbell, J.H., and Seltzer, S.M. (1995). Tables of X-Ray Mass Attenuation Coefficients and Mass Energy-Absorption Coefficients (NISTIR 5632), National Institute of Standards and Technology.
33. Deep learning10.1038/nature14539 ↗
34. Aguilera, R. (2011). Petroleum Geology of Colombia. Sinu and San Jacinto Basins, Fondo Editorial Universidad Eafit.
35. Herrera Otero, E.H. (2024). Modelado Sedimentológico y Petrofísico de la Formación Ciénaga de Oro (sur de la Cuenca Sinú-San Jacinto, Colombia); Integrando Análisis Digital de Rocas y Redes Neuronales Profundas. [Ph.D. Thesis, Universidad Autónoma de Barcelona]. Available online: https://www.tdx.cat/handle/10803/693115.
36. PoreFlow-Net: A 3D convolutional neural network to predict fluid flow through porous media10.1016/j.advwatres.2020.103539 ↗