Show source-provided references
1. NCEZID (2025, June 26). National Center for Emerging and Zoonotic Infectious Diseases (NCEZID). NCEZID. CDC 2025, Available online: https://www.cdc.gov/foodborne-outbreaks/outbreaks/?CDC_AAref_Val=https://www.cdc.gov/foodborne-outbreaks/active-investigations/index.html.
2. Vaddi, S., Burks, T.F., Iqbal, Z., Yadav, P.K., Frederick, Q., Obellaneni, S.A.C., Qin, J., Kim, M., Ritenour, M.A., and Zhang, J. (2025). Detecting Escherichia coli Contamination on Plant Leaf Surfaces Using UV-C Fluorescence Imaging and Deep Learning. Plants, 14.
10.3390/plants14213352 ↗3. Classification of E. coli Colony with Generative Adversarial Networks, Discrete Wavelet Transforms and VGG19
10.26502/jrci.2809082 ↗4. Transmission of Escherichia coli O157:H7 from Contaminated Manure and Irrigation Water to Lettuce Plant Tissue and Its Subsequent Internalization
10.1128/AEM.68.1.397-400.2002 ↗5. Long-Term Excretion of Shiga Toxin-Producing Escherichia coli (STEC) and Experimental Infection of a Sheep with O157
10.1292/jvms.64.927 ↗7. Fate of Escherichia coli O157:H7 on Fresh-Cut Apple Tissue and Its Potential for Transmission by Fruit Flies
10.1128/AEM.65.1.1-5.1999 ↗8. Detection of Escherichia coli in Food Samples Using Culture and Polymerase Chain Reaction Methods
11. Space-Confined Nanozyme with Cascade Reaction Based on PCN-224 for Synergistic Bacterial Infection Treatment and NIR Fluorescence Imaging of Wound Bacterial Infections
10.1016/j.cej.2024.150642 ↗12. Detection of Citrus Black Spot Fungi Phyllosticta Citricarpa & Phyllosticta Capitalensis on UV-C Fluorescence Images Using YOLOv8
10.1016/j.atech.2024.100615 ↗13. Cell Density and Extracellular Matrix Composition Mitigate Bacterial Biofilm Sensitivity to UV-C LED Irradiation
10.1007/s00253-024-13123-4 ↗14. Measuring the Performance of Conventional and Emerging Ultraviolet-C Light Sources for Bacterial, Fungal, and Mycotoxin Control
10.1016/j.foodcont.2024.110640 ↗15. Bacterial Image Analysis Using Multi-Task Deep Learning Approaches for Clinical Microscopy
10.7717/peerj-cs.2180 ↗16. A Systematic Literature Review of Deep Learning-Based Detection and Classification Methods for Bacterial Colonies
17. Detection of Fungal Infections from Microscopic Fungal Images Using Deep Learning Techniques
18. GLOW-DL: Generalized Light-Optimized Workflow with Deep Learning for Contamination Detection Using Fluorescence Imaging in Variable Conditions
10.1007/s42853-025-00262-3 ↗22. Hussain, D., and Hyeon Gu, Y. (2024). Exploring the Impact of Noise and Image Quality on Deep Learning Performance in DXA Images. Diagnostics, 14.
10.20944/preprints202405.0765.v1 ↗24. Pereira Neto, A., and Barros, F.J.B. (2025). Noise Reduction in Brain Magnetic Resonance Imaging Using Adaptive Wavelet Thresholding Based on Linear Prediction Factor. Front. Neurosci., 18.
10.3389/fnins.2024.1516514 ↗25. Wavelet-Based Background and Noise Subtraction for Fluorescence Microscopy Images
10.1364/BOE.413181 ↗28. The Wavelet-Based Denoising of Images in Fiji, with Example Applications in Structured Illumination Microscopy
10.5566/ias.2432 ↗29. Total Variation versus Wavelet-Based Methods for Image Denoising in Fluorescence Lifetime Imaging Microscopy
10.1002/jbio.201100137 ↗30. Explainable Artificial Intelligence (XAI): What We Know and What Is Left to Attain Trustworthy Artificial Intelligence
10.1016/j.inffus.2023.101805 ↗32. Liu, G., Zhou, W., Tian, L., Chung, C.-T., Jia, J., and Ying, C. (2025). Seg-Eigen-CAM: Eigen-Value-Based Visual Explanations for Semantic Segmentation Models. Appl. Sci., 15.
10.3390/app15137562 ↗33. Liu, X., Sun, L., Zhang, X., Ye, Y., and Zhao, B. (2025). HGNet: High-Order Spatial Awareness Hypergraph and Multi-Scale Context Attention Network for Colorectal Polyp Detection. arXiv.
34. Almenwer, S., El-Sayed, H., and Sarker, M.K. (2024, January 19–21). Classification Method in Vision Transformer with Explainability in Medical Images for Lung Neoplasm Detection. Proceedings of the 2024 International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2024), Manchester, UK. Lecture Notes in Electrical Engineering 2025, 1372 LNEE.
36. Li, D., Wang, L., and Zhang, L. (2025). SDF-YOLO: A Multi-Scale Dynamic Feature Fusion Network for Enhanced Lightweight Object Detection in Autonomous Driving. TechRxiv.
10.36227/techrxiv.174970485.57443795/v1 ↗37. Praveen, S., and Jung, Y. (2025). CBAM-STN-TPS-YOLO: Enhancing Agricultural Object Detection through Spatially Adaptive Attention Mechanisms. arXiv.
38. Jahin, A., Soudeep, S., Mridha, M.F., Member, S., Hossen, J., Dey, N., and Jakir Hossen, M. (2025). Soybean Disease Detection via Interpretable Hybrid CNN-GNN: Integrating MobileNetV2 and GraphSAGE with Cross-Modal Attention. arXiv.
39. Reduction of Escherichia Coli, as a Surrogate for Salmonella spp., on the Surface of Grapefruit during Various Packingline Processes
10.1016/j.fm.2018.10.014 ↗40. Yadav, P.K., Burks, T., Vaddi, S., Qin, J., Kim, M., Ritenour, M.A., and Vasefi, F. (2024, January 22–24). Detection of E. coli Concentration Levels Using CSI-D+ Handheld with UV-C Fluorescence Imaging and Deep Learning on Leaf Surfaces. Proceedings of the Sensing for Agriculture and Food Quality and Safety XVI, National Harbor, MD, USA.
10.1117/12.3014017 ↗42. Jocher, G., and Qiu, J. (2025, May 03). Ultralytics YOLO11 2024. Available online: https://github.com/ultralytics/ultralytics.
43. Liu, Z., Mao, H., Wu, C.Y., Feichtenhofer, C., Darrell, T., and Xie, S. (2022, January 18–24). A ConvNet for the 2020s. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition 2022, New Orleans, LA, USA.
10.1109/CVPR52688.2022.01167 ↗44. EfficientNetV2: Smaller Models and Faster Training
45. Muhammad, M.B., and Yeasin, M. (2020, January 19–24). Eigen-CAM: Class Activation Map Using Principal Components. Proceedings of the International Joint Conference on Neural Networks 2020, Glasgow, UK.
10.1109/IJCNN48605.2020.9206626 ↗46. Shirvalkar, R. (2025, May 05). EigenCAM for YOLO V11 Interpretability 2024. Available online: https://github.com/rigvedrs/YOLO-V11-CAM.
47. Choi, J., Rajendran, M., and Cheol Suh, Y. (2024, January 4–7). Explainable Rip Current Detection and Visualization with XAI EigenCAM. Proceedings of the International Conference on Advanced Communication Technology, ICACT 2024, Pyeong Chang, Republic of Korea.
10.23919/ICACT60172.2024.10471913 ↗48. Simon-Johannes, B., Thomas, R., and Kerstin, T. (2024, January 25–27). Automated Colony Detection in Fluorescent Images Using U-Net Models. Proceedings of the 2024 IEEE 22nd World Symposium on Applied Machine Intelligence and Informatics (SAMI) 2024, Stará Lesná, Slovakia.
10.1109/SAMI60510.2024.10432868 ↗