journal article·2024-07-05Open access

Dynamic Characteristics of λ-DNA Molecules Translocating through Tapered Microfluidic Channel System Driven by Electric Field Force

Yong Niu, Jie Zhu, Jianfei Wang, Yanjie Li, Yanfei Liu, Zhiwei Li, Yang Dang, Dan Sun, Kaige Wang

Applied Sciences· Volume 14· Issue 13

Abstract

The dynamic characteristics of single DNA molecules translocating within micro/nano-channels are fundamental for a wide range of applications such as stretching, separating, mapping, and even sequencing of DNA molecules. In this study, a type of tapered microchannel chip with uniform height for all configurations was fabricated, with the major tapered structure having a length of 13 μm and a width that tapers from 5 μm to 20 μm. The dynamic characteristics such as the trajectories and velocities of λ-DNA molecules translocating from different positions driven by an external DC electric field force were systematically investigated by single-molecule fluorescence imaging technology. Some dynamic characteristics of DNA molecules translocation were found. Considering simply the effects of electrophoretic force and electro-osmotic force on the DNA molecules, the dynamic characteristics of DNA molecules are well understood. For example, the velocity of the DNA molecule is inversely proportional to the diameter of the tapered channel and the turning phenomena of the trajectory of the DNA molecules translocating through microchannels. This study is helpful and proposes new ideas for the design and development of microfluidic chips for the quantitative manipulation of DNA molecules.
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Research context

OpenAlex topics: Microfluidic and Capillary Electrophoresis Applications · Microfluidic and Bio-sensing Technologies · Nanopore and Nanochannel Transport Studies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Key Laboratory of Photoelectric Technology of Shaanxi Province, National Center for International Research of Photoelectric Technology & Nano-Functional Materials and Application, Institute of Photonics and Photon-Technology, Northwest University, Xi’an 710069, China

School of Energy Engineering, Yulin University, Yulin 719100, China

Funding

National Natural Science Foundation of China · National Key Scientific Instrument and Equipment Development Projects of China · Innovation Capability Support Program of Shaanxi Province

References (37)

Show source-provided references
1. Stretching and compression of DNA by external forces under nanochannel confinement10.1039/C7SM02413D ↗
2. Robust and easy-to-use microchip electrophoresis within sub-millimeter channels for fast and highly efficient separation10.1016/j.talanta.2021.122747 ↗
3. Electro-hydrodynamic concentration of genomic length DNA10.1039/C6SM01022A ↗
4. Lin, Y.-H., Liao, X.-J., Chang, W., and Chiou, C.-C. (2022). Ultrafast DNA amplification using microchannel flow-through PCR device. Biosensors, 12.10.3390/bios12050303 ↗
5. The potential and challenges of nanopore sequencing10.1038/nbt.1495 ↗
6. Gupta, C., Liao, W.-C., Gallego-Perez, D., Castro, C., and Lee, L. (2014). DNA translocation through short nanofluidic channels under asymmetric pulsed electric field. Biomicrofluidics, 8.10.1063/1.4871595 ↗
7. Micro-and nanofluidics for DNA analysis10.1007/s00216-004-2526-0 ↗
8. Electrophoretic stretching of DNA molecules using microscale T junctions10.1063/1.2745650 ↗
9. Experimental study on heat transfer and pressure drop characteristics in a microchannel heat exchanger assembly with S-shaped fins10.1016/j.applthermaleng.2022.118406 ↗
10. Microfluidic devices for bioapplications10.1002/smll.201000946 ↗
11. DNA molecule dynamics in converging–diverging microchannels10.1042/BA20070219 ↗
12. Optimised hyperbolic microchannels for the mechanical characterisation of bio-particles10.1039/D0SM01293A ↗
13. Guan, Y., Liu, Y., Lei, H., Liu, S., Xu, F., Meng, X., Bai, M., Wang, X., and Yang, G. (2020). Dielectrophoresis separation of platelets using a novel zigzag microchannel. Micromachines, 11.10.3390/mi11100890 ↗
14. Entropy-Driven Single Molecule Tug-of-War of DNA at Micro–Nanofluidic Interfaces10.1021/nl2045292 ↗
15. Double-stranded DNA diffusion in slitlike nanochannels10.1021/ma061047t ↗
16. Measurement of electroosmotic flow velocity and electric field in microchannels by micro-particle image velocimetry10.1088/0957-0233/21/10/105402 ↗
17. DNA stretching under electrokinetically driven forces in curved microchannel flow10.1166/jnn.2017.13792 ↗
18. Double-stranded and single-stranded well-entangled DNA solutions under LAOS: A comprehensive study10.1016/j.polymer.2018.02.061 ↗
19. Electrodynamics of DNA molecules moving through microfluidic channels studied with single molecular fluorescence imaging technology10.1166/jnn.2016.11395 ↗
20. Dynamics of droplet in flow-focusing microchannel under AC electric fields10.1016/j.ijmultiphaseflow.2020.103212 ↗
21. Effects of AC/DC electric fields on stretching DNA molecules10.1142/S1793292020500654 ↗
22. Pressure-driven transport of confined DNA polymers in fluidic channels10.1073/pnas.0605900103 ↗
23. Microfluidic device to maximize capillary force driven flows for quantitative single-molecule DNA analysis10.1007/s13206-023-00115-1 ↗
24. Enhancement of DNA micro-array analysis using a shear-driven micro-channel flow system10.1016/S0021-9673(03)00715-5 ↗
25. Electroosmotic flow velocity in DNA modified nanochannels10.1016/j.jcis.2019.06.002 ↗
26. Microfluidic devices for DNA sequencing: Sample preparation and electrophoretic analysis10.1016/S0958-1669(02)00004-6 ↗
27. Large dynamic Stokes shift of DNA intercalation dye Thiazole Orange has contribution from a high-frequency mode10.1021/ja056862n ↗
28. Rühle, F., Schaaf, C., and Stark, H. (2020). Optimal control of colloidal trajectories in inertial microfluidics using the Saffman effect. Micromachines, 11.10.3390/mi11060592 ↗
29. Numerical studies of electrokinetic control of DNA concentration in a closed-end microchannel10.1002/elps.200900447 ↗
30. Continuous separation of DNA molecules by size using insulator-based dielectrophoresis10.1021/acs.analchem.6b03369 ↗
31. Counting DNA molecules on a microchannel surface for quantitative analysis10.1016/j.talanta.2022.123826 ↗
32. Soft lithography for microfluidics: A review
33. Studies on surface wettability of poly (dimethyl) siloxane (PDMS) and glass under oxygen-plasma treatment and correlation with bond strength10.1109/JMEMS.2005.844746 ↗
35. Hoelzle, D., Lake, M., Narciso, C., Cowdrick, K., Storey, T., Zhang, S., and Zartman, J. (2015). Microfluidic device design, fabrication, and testing protocols. Protoc. Exch., 1–26.
36. Direct observation of λ-DNA molecule reversal movement within microfluidic channels under electric field with single molecule imaging technique10.1088/1674-1056/25/7/078201 ↗
37. Electrically facilitated translocations of proteins through silicon nitride nanopores: Conjoint and competitive action of diffusion, electrophoresis, and electroosmosis10.1021/nl100861c ↗