journal article·2022-04-08Open access

Biosynthesis of (±)-Differolide, an Antioxidant Isolate from Streptomyces qaidamensis S10T

Yujie Wu, Wei Zhang, Kan Jiang, Xue Yu, Shiyu Wu, Guangxiu Liu, Tuo Chen

Applied Sciences· Volume 12· Issue 8

Abstract

Streptomyces from unexplored or underexplored environments may be an essential source of discoveries of bioactive molecules. One such example is Streptomyces qaidamensis S10T, which was isolated from a sand sample collected in Qaidam Basin, Qinghai Province, China. Here, we report on (±)-differolide, an antioxidant isolated from S. qaidamensis, and verified with scavenging experiments on 2,2-diphenyl-1-picrylhydrazyl (DPPH). The biosynthetic gene cluster responsible for synthesizing the compound was also identified using comparative genomic methods. These results provide a basis for further study of the biological activities of (±)-differolide, which also make it possible to develop as an antioxidant medicine.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Microbial Natural Products and Biosynthesis · Natural product bioactivities and synthesis · Carbohydrate Chemistry and Synthesis

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China

Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China

University of Chinese Academy of Sciences, Beijing 100049, China

Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China

Agronomy College, Gansu Agricultural University, Lanzhou 730000, China

Funding

National Key R&D Program of China · National Natural Science Foundation of China · The Scientific Project of Gansu Province, China

References (26)

Show source-provided references
1. Bioactive natural products from novel microbial sources10.1111/nyas.12954 ↗
2. A bioprocess perspective on the production of secondary metabolites by Streptomyces in submerged co-cultures10.1007/s11274-021-03141-z ↗
3. Quinn, G.A., Abdelhameed, A.M., Banat, A.M., Alharbi, N.K., Baker, L.M., Castro, H.C., Dyson, P.J., Facey, P.D., Cobice, D., and Terra, L. (2021). Streptomyces Isolates from the Soil of an Ancient Irish Cure Site, Capable of Inhibiting Multi-Resistant Bacteria and Yeasts. Appl. Sci., 11.10.3390/app11114923 ↗
4. Quinn, G.A., Abdelhameed, A.M., Alharbi, N.K., Cobice, D., Adu, S.A., Swain, M.T., Castro, H.C., Facey, P.D., Bakshi, H.A., and Tambuwala, M.M. (2020). The Isolation of a Novel Streptomyces sp. CJ13 from a Traditional Irish Folk Medicine Alkaline Grassland Soil that Inhibits Multiresistant Pathogens and Yeasts. Appl. Sci., 11.10.3390/app11010173 ↗
5. Sivakala, K., Gutiérrez-García, K., Jose, P.A., Thinesh, T., Anandham, R., Barona-Gómez, F., and Sivakumar, N. (2021). Desert Environments Facilitate Unique Evolution of Biosynthetic Potential in Streptomyces. Molecules, 26.10.3390/molecules26030588 ↗
6. Extreme Environment Streptomyces: Potential Sources for New Antibacterial and Anticancer Drug Leads?10.1155/2019/5283948 ↗
7. Caboxamycin, a new antibiotic of the benzoxazole family produced by the deep-sea strain Streptomyces sp. NTK 93710.1038/ja.2008.24 ↗
8. Chaxapeptin, a Lasso Peptide from Extremotolerant Streptomyces leeuwenhoekii Strain C58 from the Hyperarid Atacama Desert10.1021/acs.joc.5b01878 ↗
9. Antiviral Merosesquiterpenoids Produced by the Antarctic Fungus Aspergillus ochraceopetaliformis SCSIO 0570210.1021/acs.jnatprod.5b00650 ↗
10. Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile10.1007/s10482-008-9295-2 ↗
11. Streptomyces qaidamensis sp. nov., isolated from sand in the Qaidam Basin, China10.1038/s41429-018-0080-9 ↗
12. Streptomyces sp. MUM212 as a Source of Antioxidants with Radical Scavenging and Metal Chelating Properties10.3389/fphar.2017.00276 ↗
13. antiSMASH 6.0: Improving cluster detection and comparison capabilities10.1093/nar/gkab335 ↗
14. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection10.1038/msb4100050 ↗
15. Kieser, T., Bibb, M.J., Chater, K.F., Butter, M., Hopwood, D., Bittner, M.L., and Buttner, M.J. (2000). Practical Streptomyces Genetics: A Laboratory Manual, John Innes Centre Foundation.
16. Disruption of zwf2 gene to improve oxytetraclyline biosynthesis in Streptomyces rimosus M4018
17. Isolation and sturcture elucidation of differolide
18. Depoorter, E., De Canck, E., Coenye, T., and Vandamme, P. (2021). Burkholderia Bacteria Produce Multiple Potentially Novel Molecules that Inhibit Carbapenem-Resistant Gram-Negative Bacterial Pathogens. Antibiotics, 10.10.3390/antibiotics10020147 ↗
19. Synthetic examination of incorrectly proposed structures of biomolecules10.1002/tcr.20030 ↗
20. ChemInform Abstract: Metabolites of Microorganisms. Part 238. Isolation and Structure Elucidation of Differolide
21. Rhizophols A and B, antioxidant and axially chiral benzophenones from the endophytic fungus Cytospora rhizophorae10.1039/C9OB02282A ↗
22. Antioxidative Polyketones from the Mangrove-Derived Fungus Ascomycota sp. SK2YWS-L10.1038/srep36609 ↗
23. Hexaricins, Pradimicin-like Polyketides from a Marine Sediment-Derived Streptosporangium sp. and Their Antioxidant Effects10.1021/acs.jnatprod.8b00397 ↗
24. Extremophile—An Adaptive Strategy for Extreme Conditions and Applications10.2174/1389202921666200401105908 ↗
25. Genome analysis of 1-deoxynojirimycin (1-DNJ)-producing Bacillus velezensis K26 and distribution of Bacillus sp. harboring a 1-DNJ biosynthetic gene cluster10.1016/j.ygeno.2020.09.061 ↗
26. Comparative genomics and transcriptomics analyses provide insights into the high yield and regulatory mechanism of Norvancomycin biosynthesis in Amycolatopsis orientalis NCPC 2-4810.1186/s12934-021-01521-6 ↗