Isolation of Jannaschia sedimins sp. nov. from East Coast of China: Bacterial Taxonomy and Antimicrobial Resistance Analysis
Source abstract
Abstract
A Gram-stain-negative, facultatively aerobic, pink and oval bacterium, designed OS4T, was isolated from a sediment sample taken from a coastal zone in China. The growth of OS4T occurred at 20–37 °C (optimal 25 °C), pH 7.0–8.5 (optimal pH 8.0), in 0–5.0% (w/v) NaCl (optimal 2.0%). According to the phylogenetic analysis, strain OS4T showed the highest sequence similarity (96.04%) with Jannaschia aquimarina GSW-M26T and shared 94.98% similarity with the type species of genus Jannaschia-strain J. helgolandensis 14858T. Chemotaxonomic analysis showed that the sole respiratory quinone was ubiquinone 10, and the major fatty acids (>5.0%) included C18:1 ω6c/ω7c, C18:0, and C10:0 3OH. The polar lipids consist of three phospholipids, two unknown amino-lipids, and four unknown glycerolipids. The DNA G + C content was 72.7 mol%. Based on the evidence presented in this study, strain OS4T represents a novel species of the genus Jannaschia, for which the name Jannaschia sedimins sp. nov. is proposed. The type strain is OS4T (=KCTC 82508T = MCCC 1K03755T). Both the phenotypic and the genetic analysis on the antimicrobial resistance genes indicate that OS4T is resistant to a wide range of classes of antibiotics, which highlights that the ocean could potentially serve as the natural reservoir of antimicrobial resistance genes.
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Research context
OpenAlex topics: Genomics and Phylogenetic Studies · Bacterial Identification and Susceptibility Testing · Aquaculture disease management and microbiota
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
Marine College, Shandong University, Weihai 264209, China
Weihai Municipal Ecological and Environmental Monitoring Center, Weihai 264209, China
Infection Program and Department of Microbiology, Biomedicine Discovery Institute, Monash University, Melbourne, VIC 3800, Australia
State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266200, China
Funding
Shandong Provincial Key Research and Development Program (China)
References (35)
Show source-provided references
1. Antimicrobial resistance: A global multifaceted phenomenon10.1179/2047773215Y.0000000030 ↗
2. Antibiotics and bacterial resistance in the 21st century10.4137/PMC.S14459 ↗
3. Towards the sustainable discovery and development of new antibiotics10.1038/s41570-021-00313-1 ↗
4. Origins and evolution of antibiotic resistance10.1128/MMBR.00016-10 ↗
5. Antibiotic resistance in aquatic systems10.3389/fmicb.2017.00014 ↗
6. Urban wastewater treatment plants as hotspots for the release of antibiotics in the environment: A review10.1016/j.watres.2012.11.027 ↗
7. Jannaschia helgolandensis gen. nov., sp. nov., a novel abundant member of the marine Roseobacter clade from the North Sea10.1099/ijs.0.02377-0 ↗
8. Jannaschia cystaugens sp. nov., an Alexandrium (Dinophyceae) cyst formation-promoting bacterium from Hiroshima Bay, Japan10.1099/ijs.0.03029-0 ↗
9. Jannaschia rubra sp. nov., a red-pigmented bacterium isolated from sea water10.1099/ijs.0.63412-0 ↗
10. Jannaschia seosinensis sp. nov., isolated from hypersaline water of a solar saltern in Korea10.1099/ijs.0.63835-0 ↗
11. Jannaschia faecimaris sp. nov., isolated from a tidal flat sediment10.1099/ijs.0.057984-0 ↗
12. Jannaschia marina sp. nov., isolated from the gut of a gastropod, Onchidium reevesii
13. Jannaschia formosa sp. nov., isolated from marine saltern sediment10.1099/ijsem.0.003424 ↗
14. Jannaschia confluentis sp. nov., isolated from the junction between the ocean and a freshwater spring10.1099/ijsem.0.002564 ↗
15. Jannaschia donghaensis sp. nov., isolated from seawater of the East Sea, Korea10.1099/ijs.0.65026-0 ↗
16. Jannaschia pohangensis sp. nov., isolated from seashore sand in Korea10.1099/ijs.0.65167-0 ↗
17. Jannaschia seohaensis sp. nov., isolated from a tidal flat sediment10.1099/ijs.0.011270-0 ↗
18. Jannaschia aquimarina sp. nov., isolated from seawater10.1099/ijs.0.038448-0 ↗
19. Alkalimarinus sediminis gen. nov., sp. nov., isolated from marine sediment10.1099/ijsem.0.000446 ↗
20. Smibert, R. (1994). Phenotypic characterization. Methods Gen. Mol. Bacteriol., 607–654.
21. Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov10.1099/00207713-50-5-1861 ↗
22. Clinical and Laboratory Standards Institute (2020). Performance Standards for Antimicrobial Susceptibility Testing, Clinical and Laboratory Standards Institute. [30th ed.]. CLSI Supplement M100.
23. Draconibacterium orientale gen. nov., sp. nov., isolated from two distinct marine environments, and proposal of Draconibacteriaceae fam. nov10.1099/ijs.0.056812-0 ↗
24. Stackebrandt, E., and Goodfellow, M. (1991). Nucleic Acid Techniques in Bacterial Systematics, Wiley.
25. Introducing EzBioCloud: A taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies10.1099/ijsem.0.001755 ↗
26. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools10.1093/nar/25.24.4876 ↗
27. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets10.1093/molbev/msw054 ↗
28. Trimmomatic: A flexible trimmer for Illumina sequence data10.1093/bioinformatics/btu170 ↗
29. Using SPAdes de novo assembler10.1002/cpbi.102 ↗
30. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries10.1038/s41467-018-07641-9 ↗
31. CARD 2020: Antibiotic resistome surveillance with the comprehensive antibiotic resistance database
32. Sasser, M. (1990). Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI, Inc.. Available online: http://natasha.eng.usf.edu/gilbert/courses/Biotransport%20Phenomena/pdf/bacteria_gc_1.pdf.
33. Tindall, B.J., Sikorski, J., Smibert, R.A., and Krieg, N.R. (2007). Phenotypic characterization and the principles of comparative systematics. Methods Gen. Mol. Microbiol., 330–393.10.1128/9781555817497.ch15 ↗
34. Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases10.1080/01483918208067640 ↗
35. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids10.1016/0167-7012(84)90018-6 ↗