journal article·2022-04-24Open access

Linear and Non-Linear Population Retrieval with Femtosecond Optical Pumping of Molecular Crystals for the Generalised Uniaxial and Biaxial Systems

Christopher D. M. Hutchison, Alisia Fadini, Jasper J. van Thor

Applied Sciences· Volume 12· Issue 9

Abstract

Femtosecond optical measurements of photoexcitable molecular crystals carry ultrafast dynamics information with structural sensitivity. The creation and detection of transient dynamics depend on the optical parameters, as well as the explicit molecular structure, crystal symmetry, crystal orientation, polarisation of the photoexciting beam, and interaction geometry. In order to retrieve the linear and non-linear population transfer in photoexcited crystals, excitation theory is combined here with the calculation of birefringence decomposition and is shown for both the generalised uniaxial and biaxial systems. A computational tool was constructed based on this treatment to allow modelling of electric field decomposition, dipole projections, and non-linear excitation population levels. This is available open source and with a GUI for ease of use. Such work has applications in two areas of ultrafast science: multidimensional optical crystallography and femtosecond time-resolved X-ray crystallography.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Spectroscopy and Quantum Chemical Studies · Molecular spectroscopy and chirality · Photochemistry and Electron Transfer Studies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Life Sciences, Faculty of Natural Sciences, Imperial College London, London SW7 2AZ, UK

Funding

Biotechnology and Biological Sciences Research Council · Leverhulme Trust

References (26)

Show source-provided references
1. Multidimensional Femtosecond Correlation Spectroscopies of Electronic and Vibrational Excitations10.1146/annurev.physchem.51.1.691 ↗
2. Two-Dimensional Femtosecond Spectroscopy10.1146/annurev.physchem.54.011002.103907 ↗
3. Theory of coherent two-dimensional vibrational spectroscopy10.1063/1.5083966 ↗
4. Electronic resonance with anticorrelated pigment vibrations drives photosynthetic energy transfer outside the adiabatic framework10.1073/pnas.1211157110 ↗
5. Coherence in Energy Transfer and Photosynthesis10.1146/annurev-physchem-040214-121713 ↗
6. Ultrafast carrier thermalization in lead iodide perovskite probed with two-dimensional electronic spectroscopy10.1038/s41467-017-00546-z ↗
7. Coherent two-dimensional electronic and infrared crystallography10.1063/1.5079319 ↗
8. Physical Properties of Crystals: Their Representation by Tensors and Matrices10.1063/1.3060200 ↗
9. Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation10.1126/science.aac5492 ↗
10. Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein10.1126/science.aad5081 ↗
11. Nogly, P., Weinert, T., James, D., Carbajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., and Jaeger, K. (2018). Retinal isomerization in bacteriorhodopsin captured by a femtosecond X-ray laser. Science, eaat0094.10.2210/pdb6g7h/pdb ↗
12. Optical control, selection and analysis of population dynamics in ultrafast protein X-ray crystallography10.1098/rsta.2017.0474 ↗
13. Born, M., and Wolf, E. (1994). Principles of optics: Electromagnetic Theory of Propagation, Interference and Diffraction of Light, Pergamon Press.
14. Infrared protein crystallography10.1016/j.bbapap.2011.02.012 ↗
15. Birefringence of tropomyosin crystals10.1016/S0006-3495(88)82926-6 ↗
16. Crystal Structure of Human Carboxyhæmoglobin10.1038/160786a0 ↗
17. Michel-Lévy, A., and Lacroix, A. (1888). Les Mineraux des Roches, Librairie Polytechnique.
18. Stoiber, R.E., and Morse, S.A. (1994). Crystal Identification with the Polarizing Microscope, Springer.10.1007/978-1-4615-2387-1 ↗
19. Nesse, W. (2012). Introduction to Optical Mineralogy, Oxford University Press. [4th ed.].
20. The Conformation of Native and Denatured Tropomyosin B *10.1021/bi00887a021 ↗
21. Boyd, R.W. (2008). Nonlinear Optics, Academic Press.
22. Zamzam, N., and van Thor, J. (2019). Excited State Frequencies of Chlorophyll f and Chlorophyll a and Evaluation of Displacement through Franck-Condon Progression Calculations. Molecules, 24.10.3390/molecules24071326 ↗
23. Photocycle populations with femtosecond excitation of crystalline photoactive yellow protein10.1016/j.cplett.2016.04.087 ↗
24. (2016). Anaconda Software Distribution, Anaconda, Inc.
25. Photoisomerisation quantum yield and non-linear cross-sections with femtosecond excitation of the photoactive yellow protein10.1039/c2cp41718a ↗
26. Spin-crossover nanoparticles anchored on MoS2 layers for heterostructures with tunable strain driven by thermal or light-induced spin switching