journal article·2021-07-28Open access

Effect of Shiga Toxin on Inhomogeneous Biological Membrane Structure Determined by Small-Angle Scattering

Shuyang Tu, Haijiao Zhang, Yawen Li, Yongchao Zhang, Qiang Tian, László Almásy, Xianhui Xu, Rongguang Zhang, Aihua Zou, Na Li

Applied Sciences· Volume 11· Issue 15

Abstract

Inhomogeneous structure occurring in biological membranes being rich in glycosphingolipids (GSL) has been proposed as an important phenomenon involved in the cellular endocytosis process. However, little is known about the correlation between the formation of microdomains and the GSL-dependent biogenesis for tubular endocytic pits occurred on the surface of the cellular membrane. In the present work, the interaction between the bacterial Shiga toxin from Escherichia coli (STxB) and its cellular receptor GSL globotriaosylceramide (Gb3) were studied using small unilamellar vesicle (SUV). The model membrane invagination induced by STxB was determined by the contrast variation small-angle neutron scattering (SANS) and the synchrotron radiation facility based small-angle X-ray scattering (SR-SAXS). The results revealed that Gb3 molecules provided the binding sites for STxB, inducing increased membrane fluctuation. The formation of protein–lipid complex (STxB-Gb3) apparently induced the thinning of model membrane with the thickness decreased from 3.10 nm to 2.50 nm. It is the first time to successfully characterize the mesoscopic change on membrane thickness upon GSL-dependent endocytic process using a small-angle scattering technique. Overall, this paper provided a practical method to quantify the inhomogeneous biological membrane structures, which is important to understand the cellular endocytosis process.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Lipid Membrane Structure and Behavior · Cellular transport and secretion · Protein Structure and Dynamics

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

National Facility for Protein Science in Shanghai, Zhangjiang Lab, Shanghai Advanced Research Institute, CAS, No.333, Haike Road, Shanghai 201210, China

State Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, No.320, Yueyang Road, Shanghai 200031, China

Department of Chemistry, Qilu Normal University, Jinan 250013, China

College of Chemistry and Materials Science, Shanghai Normal University, Shanghai 200234, China

State Key Laboratory of Environment-Friendly Energy Materials, Southwest University of Science and Technology, Mianyang 621010, China

Centre for Energy Research, Institute for Energy Security and Environmental Safety, Konkoly-Thege Str. 29–33, 1121 Budapest, Hungary

Funding

National Natural Science Foundation of China · Youth Innovation Promotion Association of the Chinese Academy of Sciences · Natural Science Foundation of Shanghai · Southwest University of Science and Technology

References (40)

Show source-provided references
2. Merging complexes: Properties of membrane raft assembly during lymphocyte signaling10.1016/j.it.2004.11.016 ↗
3. Membrane lipids and vesicular traffic10.1016/j.ceb.2004.06.004 ↗
4. Sheets, ribbons and tubules—How organelles get their shape10.1038/nrm2119 ↗
5. The dependence receptor DCC requires lipid raft localization for cell death signaling10.1073/pnas.0507864103 ↗
6. Spatial differences in active caspase-8 defines its role in T-cell activation versus cell death10.1038/cdd.2008.100 ↗
7. Proteomic analysis of membrane rafts of melanoma cells identifies protein patterns characteristic of the tumor progression stage10.1002/pmic.200800169 ↗
8. Lipid rafts: At a crossroad between cell biology and physics10.1038/ncb0107-7 ↗
9. Functional rafts in cell membranes10.1038/42408 ↗
10. Molecules, mechanisms, and cellular roles of clathrin-independent endocytosis10.1016/j.ceb.2010.04.001 ↗
11. Induced domain formation in endocytic invagination, lipid sorting, and scission10.1016/j.cell.2010.08.007 ↗
12. Nanoscale organization of multiple GPI-anchored proteins in living cell membranes10.1016/S0092-8674(04)00167-9 ↗
13. Membrane deformation by protein coats10.1016/j.ceb.2006.06.003 ↗
14. Aggregation and vesiculation of membrane proteins by curvature-mediated interactions10.1038/nature05840 ↗
15. Shiga toxin induces tubular membrane invaginations for its uptake into cells10.1038/nature05996 ↗
16. Mechanism of Shiga Toxin Clustering on Membranes10.1021/acsnano.6b05706 ↗
17. The 2018 biomembrane curvature and remodeling roadmap10.1088/1361-6463/aacb98 ↗
18. The Influence of Retardation on the London-van der Waals Forces10.1103/PhysRev.73.360 ↗
19. Reconstituted Postsynaptic Density as a Molecular Platform for Understanding Synapse Formation and Plasticity10.1016/j.cell.2018.06.047 ↗
20. Determination of asymmetric structure of ganglioside-DPPC mixed vesicle using SANS, SAXS, and DLS10.1016/S0006-3495(03)74591-3 ↗
21. Upgraded SSRF BL19U2 beamline for small-angle X-ray scattering of biological macromolecules in solution10.1107/S160057671801316X ↗
22. A new time-of-flight small-angle scattering instrument at the Helmholtz-Zentrum Berlin: V16/VSANS10.1107/S1600576713030227 ↗
23. SASfit: A tool for small-angle scattering data analysis using a library of analytical expressions
24. Phospholipid component volumes: Determination and application to bilayer structure calculations10.1016/S0006-3495(98)77563-0 ↗
25. Structure of lipid bilayers10.1016/S0304-4157(00)00016-2 ↗
26. Intensive extrusion and occlusion of water in ganglioside micelles with thermal reversibility10.1016/S0006-3495(98)78008-7 ↗
27. Hydration and thermal reversibility of glycolipids depending on sugar chains10.1007/s00249-001-0190-2 ↗
28. Translational diffusion of individual class II MHC membrane proteins in cells10.1016/S0006-3495(02)75277-6 ↗
29. Nanoclusters of GPI-anchored proteins are formed by cortical actin-driven activity10.1016/j.cell.2008.11.032 ↗
30. Gangliosides GM1 and GM3 in the living cell membrane form clusters susceptible to cholesterol depletion and chilling10.1091/mbc.e07-01-0071 ↗
31. H-ras, K-ras, and inner plasma membrane raft proteins operate in nanoclusters with differential dependence on the actin cytoskeleton10.1073/pnas.0504114102 ↗
32. Gramicidin Increases Lipid Flip-Flop in Symmetric and Asymmetric Lipid Vesicles10.1016/j.bpj.2019.01.016 ↗
33. Microdomains in lipid vesicles: Structure and distribution assessed by small-angle neutron scattering10.1021/jp101167n ↗
34. Properties of glycolipid-enriched membrane rafts in antigen presentation10.1615/CritRevImmunol.v25.i1.20 ↗
35. Membrane curvature sorts lipids. Stabilized lipid rafts in membrane transport10.1038/sj.embor.7400410 ↗
36. Lipid rafts take center stage in endothelial cell redox signaling by death receptors10.1161/01.HYP.0000196730.13216.f3 ↗
37. Domain-induced budding of vesicles10.1103/PhysRevLett.70.2964 ↗
38. GM1 structure determines SV40-induced membrane invagination and infection10.1038/ncb1999 ↗
39. Windschiegl, B., Orth, A., Romer, W., Berland, L., Stechmann, B., Bassereau, P., Johannes, L., and Steinem, C. (2009). Lipid reorganization induced by Shiga toxin clustering on planar membranes. PLoS ONE, 4.10.1371/journal.pone.0006238 ↗
40. Sterol structure determines the separation of phases and the curvature of the liquid-ordered phase in model membranes10.1073/pnas.0408215102 ↗