journal article·2020-06-02Open access

PDMS-Based Microdevices for the Capture of MicroRNA Biomarkers

Lorenzo Lunelli, Federica Barbaresco, Giorgio Scordo, Cristina Potrich, Lia Vanzetti, Simone Luigi Marasso, Matteo Cocuzza, Candido Fabrizio Pirri, Cecilia Pederzolli

Applied Sciences· Volume 10· Issue 11

Abstract

The isolation and analysis of circulating biomarkers, the main concern of liquid biopsy, could greatly benefit from microfluidics. Microfluidics has indeed the huge potentiality to bring liquid biopsy into the clinical practice. Here, two polydimethylsiloxane (PDMS)-based microdevices are presented as valid tools for capturing microRNAs biomarkers from clinically-relevant samples. After an extensive study of functionalized polydimethylsiloxane (PDMS) properties in adsorbing/eluting microRNAs, the best conditions were transferred to the microdevices, which were thoroughly characterized. The channels morphology and chemical composition were measured, and parameters for the automation of measures were setup. The best working conditions were then used with microdevices, which were proven to capture microRNAs on all channel surfaces. Finally, microfluidic devices were successfully validated via real-time PCR for the detection of a pool of microRNAs related to non-small cell lung cancer, selected as proof-of-principle. The microfluidic approach described here will allow a step forward towards the realization of an efficient microdevice, possibly automated and integrated into a microfluidic lab-on-a-chip with high analytical potentialities.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Microfluidic and Capillary Electrophoresis Applications · Innovative Microfluidic and Catalytic Techniques Innovation · Microfluidic and Bio-sensing Technologies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Fondazione Bruno Kessler, Center for Materials and Microsystems, via Sommarive 18, I-38123 Povo (Trento), Italy

CNR—Consiglio Nazionale delle Ricerche, Istituto di Biofisica, via alla Cascata 56/C, I-38123 Povo (Trento), Italy

Department of Applied Science and Technology, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Torino, Italy

CNR-IMEM, Parco Area delle Scienze 37a, 43124 Parma, Italy

Istituto Italiano di Tecnologia, Center for Sustainable Future Technologies @ PoliTo, Corso Trento 21, 10129 Torino, Italy

Funding

Regione Piemonte

References (40)

Show source-provided references
1. Current and future applications of liquid biopsy in nonsmall cell lung cancer from early to advanced stages10.1183/16000617.0052-2019 ↗
2. Liquid biopsies for management of pancreatic cancer10.1016/j.trsl.2018.07.008 ↗
3. Microfluidics for Biomedical Analysis10.1002/smtd.201900451 ↗
4. Emerging Trends in Microfluidics Based Devices10.1002/biot.201900279 ↗
5. Emerging Nanotechnologies for Liquid Biopsy: The Detection of Circulating Tumor Cells and Extracellular Vesicles10.1002/adma.201805344 ↗
6. Cancer diagnosis: From tumor to liquid biopsy and beyond
7. Recent Advances in Microfluidic Platforms Applied in Cancer Metastasis: Circulating Tumor Cells’ (CTCs) Isolation and Tumor-On-A-Chip10.1002/smll.201903899 ↗
8. Microfluidic Single-Cell Omics Analysis10.1002/smll.201903905 ↗
9. Organ on a chip: Recent breakthroughs and future prospects10.1186/s12938-020-0752-0 ↗
10. Nucleic acid diagnostics on the total integrated lab-on-a-disc for point-of- care testing10.1016/j.bios.2019.111466 ↗
11. Simple PDMS microdevice for biomedical applications10.1016/j.talanta.2018.09.080 ↗
12. A polymer lab-on-a-chip for genetic analysis using the arrayed primer extension on microarray chips10.1007/s10544-014-9869-x ↗
13. Optimized design and fabrication of a microfluidic platform to study single cells and multicellular aggregates in 3D10.1007/s10404-017-1872-0 ↗
14. Mechanical characterization of bulk Sylgard 184 for microfluidics and microengineering10.1088/0960-1317/24/3/035017 ↗
15. Soft and flexible material-based affinity sensors10.1016/j.biotechadv.2019.05.004 ↗
16. Hemocompatibility, Biocompatibility, Inflammatory and in Vivo Studies of Primary Reference Materials Low-Density Polyethylene and Polydimethylsiloxane: A Review10.1002/jbm.1043 ↗
17. Characterization of polydimethylsiloxane (PDMS) properties for biomedical micro/nanosystems10.1007/s10544-005-6070-2 ↗
18. Solid phase DNAextraction on PDMS and direct amplification10.1039/c1lc20371a ↗
19. OncomiR detection in circulating body fluids: A PDMS microdevice perspective10.1039/C4LC00630E ↗
20. miRNA purification with an optimized PDMS microdevice: Toward the direct purification of low abundant circulating biomarkers10.1016/j.bpc.2017.04.009 ↗
21. Surface modification of poly(dimethylsiloxane) microchannels10.1002/elps.200305627 ↗
22. Polyurethane cationomers modified by polysiloxane10.1002/pat.4013 ↗
23. Fiji: An open-source platform for biological-image analysis10.1038/nmeth.2019 ↗
24. Beamson, G., and Briggs, D. (1992). High Resolution XPS of Organic Polymers, the Scienta ESCA300 Database, Wiley.
25. RxpsG a new open project for Photoelectron and Electron Spectroscopy data processing10.1016/j.softx.2019.100282 ↗
26. Contributions of phosphate to dna adsorption/desorption behaviors on aminosilane-modified magnetic nanoparticles10.1021/la8032397 ↗
27. A new silanizing agent tailored to surface bio-functionalization10.1016/j.colsurfb.2019.05.034 ↗
28. Novel combination of serum microRNA for detecting breast cancer in the early stage10.1111/cas.12880 ↗
29. microRNA-1246 Is an Exosomal Biomarker for Aggressive Prostate Cancer10.1158/0008-5472.CAN-17-2069 ↗
30. Aberrant miR-1246 expression promotes radioresistance in non-small cell lung cancer: A potential prognostic biomarker and radiotherapy sensitization target
31. Innovative microRNA purification based on surface properties modulation10.1016/j.colsurfb.2013.12.033 ↗
32. Correlation of the Base Strengths of Amines10.1021/ja01577a030 ↗
33. Determination of the Surface pK of Carboxylic- and AmineTerminated Alkanethiols Using Surface Plasmon Resonance10.1021/la701760s ↗
34. Force Titrations and Ionization State Sensitive Imaging of Functional Groups in Aqueous Solutions by Chemical Force Microscopy10.1021/ja963375m ↗
35. Noy, A. (2007). Chemical Force Microscopy: Force Spectroscopy and Imaging of Complex Interactions in Molecular Assemblies. Handbook of Molecular Force Spectroscopy, Springer.10.1007/978-0-387-49989-5 ↗
36. Inhibition of on-chip PCR using PDMS–glass hybrid microfluidic chips10.1007/s10404-012-0968-9 ↗
37. Effect of materials for micro-electro-mechanical systems on PCR yield10.1007/s00249-009-0466-5 ↗
38. Poly (dimethyl siloxane) (PDMS) XPS Reference Core Level and Energy Loss Spectra10.1116/11.20050908 ↗
39. Identification of ten serum microRNAs from a genome-wide serum microRNA expression profile as novel noninvasive biomarkers for nonsmall cell lung cancer diagnosis10.1002/ijc.26177 ↗
40. Circulating MicroRNAs in Cancer: Potential and Challenge10.3389/fgene.2019.00626 ↗