journal article·2026-01-28Open access

Denoising of CT and MRI Images Using Decomposition-Based Curvelet Thresholding and Classical Filtering Techniques

Mahmoud Nasr, Krzysztof Brzostowski, Rafał Obuchowicz, Adam Piórkowski

Applied Sciences· Volume 16· Issue 3

Abstract

Medical image denoising is crucial for enhancing the diagnostic accuracy of CT and MRI images. This paper presents a modular hybrid framework that combines multiscale decomposition techniques (Empirical Mode Decomposition, Variational Mode Decomposition, Bidimensional EMD, and Multivariate EMD) with curvelet transform thresholding and traditional spatial filters. The methodology was assessed using a phantom dataset containing regulated Rician noise, clinical CT images rebuilt with sharp (B50f) and medium (B46f) kernels, and MRI scans obtained at various GRAPPA acceleration factors. In phantom trials, MEMD–Curvelet attained the highest SSIM (0.964) and PSNR (28.35 dB), while preserving commendable perceptual scores (NIQE approximately 7.55, BRISQUE around 38.8). In CT images, VMD–Curvelet and MEMD–Curvelet consistently outperformed classical filters, achieving SSIM values over 0.95 and PSNR values above 28 dB, even with sharp-kernel reconstructions. In MRI datasets, MEMD–Curvelet and BEMD–Curvelet reduced perceptual distortion, decreasing NIQE by up to 15% and BRISQUE by 20% compared to Gaussian and median filtering. Deep learning baselines validated the framework’s competitiveness: BM3D attained high fidelity but necessitated 6.65 s per slice, while DnCNN delivered equivalent SSIM (0.958) with a diminished runtime of 2.33 s. The results indicate that the proposed framework excels at noise reduction and structure preservation across various imaging settings, surpassing independent filtering and transform-only methods. Its versatility and efficiency underscore its potential for therapeutic integration in situations necessitating high-quality denoising under limited acquisition conditions.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Image and Signal Denoising Methods · Advanced Image Processing Techniques · Medical Imaging Techniques and Applications

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Biocybernetics and Biomedical Engineering, AGH University of Krakow, 30-059 Krakow, Poland

Sano Centre for Computational Medicine, 30-054 Krakow, Poland

Faculty of Information and Communication Technology, Wroclaw University of Science and Technology, 50-370 Wroclaw, Poland

Department of Diagnostic Imaging, Jagiellonian University Medical College, 31-501 Krakow, Poland

References (80)

Show source-provided references
1. A review on medical image denoising algorithms10.1016/j.bspc.2020.102036 ↗
2. A complete review on image denoising techniques for medical images10.1007/s11063-023-11286-1 ↗
3. Diffusion probabilistic priors for zero-shot low-dose CT image denoising10.1002/mp.17431 ↗
4. A comprehensive review of image denoising in deep learning10.1007/s11042-023-17468-2 ↗
5. CT image denoising methods for image quality improvement and radiation dose reduction10.1002/acm2.14270 ↗
6. A comprehensive review of image analysis methods for microorganism counting: From classical image processing to deep learning approaches10.1007/s10462-021-10082-4 ↗
7. Gaussian filtering of images: A regularization approach10.1016/0165-1684(89)90048-0 ↗
8. Lim, J.S. (1990). Two-Dimensional Signal and Image Processing, Prentice-Hall, Inc.
9. Tomasi, C., and Manduchi, R. (1998, January 7). Bilateral filtering for gray and color images. Proceedings of the Sixth International Conference on Computer Vision (IEEE Cat. No. 98CH36271), Bombay, India.
10. Fast noise variance estimation10.1006/cviu.1996.0060 ↗
11. Scale-space and edge detection using anisotropic diffusion10.1109/34.56205 ↗
12. Total variation as a local filter10.1137/100785855 ↗
13. From Classical to Deep Learning: A Systematic Review of Image Denoising Techniques
14. Review of Filter-Based Image Denoising Methods
15. IDTransformer: Infrared image denoising method based on convolutional transposed self-attention10.1016/j.aej.2024.09.101 ↗
16. A novel approach for CT image smoothing: Quaternion Bilateral Filtering for kernel conversion10.1016/j.compbiomed.2025.110644 ↗
17. The curvelet transform for image denoising10.1109/TIP.2002.1014998 ↗
18. The curvelet transform10.1109/MSP.2009.935453 ↗
19. Improved iterative curvelet thresholding for compressed sensing and measurement10.1109/TIM.2010.2049221 ↗
20. Biswas, R., Purkayastha, D., and Roy, S. (2018). Denoising of MRI images using curvelet transform. Advances in Systems, Control and Automation: ETAEERE-2016, Springer.10.1007/978-981-10-4762-6_55 ↗
21. Empirical mode decomposition as a filter bank10.1109/LSP.2003.821662 ↗
22. Variational mode decomposition10.1109/TSP.2013.2288675 ↗
23. A fast algorithm for bidimensional EMD10.1109/LSP.2005.855548 ↗
24. Asghar, M.A., Khan, M.J., Amin, Y., and Akram, A. (2020, January 22–23). EEG-based emotion recognition for multi channel fast empirical mode decomposition using VGG-16. Proceedings of the 2020 International Conference on Engineering and Emerging Technologies (ICEET), Lahore, Pakistan.10.1109/ICEET48479.2020.9048217 ↗
25. Beyond a gaussian denoiser: Residual learning of deep cnn for image denoising10.1109/TIP.2017.2662206 ↗
26. Duan, L., Cai, J., Wang, L., and Shi, Y. (2025). Research on Seismic Signal Denoising Model Based on DnCNN Network. Appl. Sci., 15.10.3390/app15042083 ↗
27. Collaborative filtering of correlated noise: Exact transform-domain variance for improved shrinkage and patch matching10.1109/TIP.2020.3014721 ↗
28. Adversarial EM for variational deep learning: Application to semi-supervised image quality enhancement in low-dose PET and low-dose CT10.1016/j.media.2024.103291 ↗
29. Wang, M., Zheng, S., Li, X., and Qin, X. (2014, January 2–4). A new image denoising method based on Gaussian filter. Proceedings of the 2014 International Conference on Information Science, Electronics and Electrical Engineering, London, UK.10.1109/InfoSEEE.2014.6948089 ↗
30. A comprehensive survey on impulse and Gaussian denoising filters for digital images10.1016/j.sigpro.2018.12.006 ↗
31. Algorithm for image processing using improved median filter and comparison of mean, median and improved median filter
32. The guided bilateral filter: When the joint/cross bilateral filter becomes robust10.1109/TIP.2015.2389617 ↗
33. Nasr, M., Piórkowski, A., Brzostowski, K., and El-Samie, F.E.A. (2023). An approach for ct image conversion using filtering based on quaternion mathematics. International Conference on Computer Recognition Systems, Polanica Zdroj, Poland, 22–24 May 2023, Springer.10.1007/978-3-031-41630-9_15 ↗
34. Buades, A., Coll, B., and Morel, J.M. (2005, January 20–26). A non-local algorithm for image denoising. Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR’05), San Diego, CA, USA.
35. NLM based magnetic resonance image denoising—A review10.1016/j.bspc.2018.08.031 ↗
36. Adaptive noise-reducing anisotropic diffusion filter10.1007/s00521-015-1933-9 ↗
37. A total variation recursive space-variant filter for image denoising10.1016/j.dsp.2015.02.002 ↗
38. Shevkunov, I., Katkovnik, V., Claus, D., Pedrini, G., Petrov, N.V., and Egiazarian, K. (2019). Spectral object recognition in hyperspectral holography with complex-domain denoising. Sensors, 19.10.3390/s19235188 ↗
39. Nonlocal transform-domain filter for volumetric data denoising and reconstruction10.1109/TIP.2012.2210725 ↗
40. Image denoising based on improved bidimensional empirical mode decomposition thresholding technology10.1007/s11042-018-6503-6 ↗
41. Multivariate empirical mode decomposition
42. A multivariate empirical mode decomposition–based data-driven approach for extracting task-dependent hemodynamic responses in olfactory-induced fMRI10.1109/ACCESS.2019.2893923 ↗
43. Nasr, M., Brzostowski, K., and Piórkowski, A. (2025). Enhanced CT Image Reconstruction Using VMD-Based Quaternion Bilateral Filtering. International Conference on Computational Collective Intelligence, Ho Chi Minh City, Vietnam, 12–15 November 2025, Springer.10.1007/978-3-032-09321-9_19 ↗
44. Dominant noise-aided EMD (DEMD): Extending empirical mode decomposition for noise reduction by incorporating dominant noise and deep classification10.1016/j.bspc.2022.104218 ↗
45. Li, S., Zhao, Q., Liu, J., Zhang, X., and Hou, J. (2025). Noise Reduction of Steam Trap Based on SSA-VMD Improved Wavelet Threshold Function. Sensors, 25.10.3390/s25051573 ↗
46. Denoising and segmentation in medical image analysis: A comprehensive review on machine learning and deep learning approaches10.1007/s11042-024-19313-6 ↗
47. Medical image fusion and denoising algorithm based on a decomposition model of hybrid variation-sparse representation10.1109/JBHI.2022.3196710 ↗
48. A hybrid medical image denoising based on block matching 3D collaborative filtering10.1007/s42979-023-02359-y ↗
49. A hybrid frequency-spatial domain unsupervised denoising model for Gaussian–Poisson mixed noise in medical imaging10.1016/j.compbiomed.2025.110374 ↗
50. A novel medical image enhancement technique based on hybrid method10.1088/1742-6596/2432/1/012021 ↗
51. A new hybrid image denoising algorithm using adaptive and modified decision-based filters for enhanced image quality10.1038/s41598-025-92283-3 ↗
52. Reddy, I.S.S., Prakash, K.B., Reddy, P.H., Singh, T., Mandal, A., and Chatterjee, S. (2024, January 24–28). Image Denoising using Multiscale Transforms. Proceedings of the 2024 15th International Conference on Computing Communication and Networking Technologies (ICCCNT), Kamand, India.10.1109/ICCCNT61001.2024.10724429 ↗
53. Visual enhancement of underwater images using empirical mode decomposition10.1016/j.eswa.2011.07.077 ↗
54. Noise reduction method for ship radiated noise signal based on modified uniform phase empirical mode decomposition10.1016/j.measurement.2024.114193 ↗
55. Image empirical mode decomposition: A new tool for image processing10.1142/S1793536909000138 ↗
56. Empirical mode decomposition: Applications on signal and image processing10.1142/S1793536909000059 ↗
57. Lahmiri, S., and Boukadoum, M. (2014, January 22–24). Biomedical image denoising using variational mode decomposition. Proceedings of the 2014 IEEE Biomedical Circuits and Systems Conference (BioCAS) Proceedings, Lausanne, Switzerland.10.1109/BioCAS.2014.6981732 ↗
58. VMD-based denoising methods for surface electromyography signals10.1088/1741-2552/ab33e4 ↗
59. Bidimensional empirical mode decomposition method for image processing in sensing system10.1016/j.compeleceng.2018.03.033 ↗
60. Rehman, N., Khan, M.M., Sohaib, M., Jehanzaib, M., Ehsan, S., and McDonald-Maier, K. (2014, January 27–30). Image fusion using multivariate and multidimensional EMD. Proceedings of the 2014 IEEE International Conference on Image Processing (ICIP), Paris, France.10.1109/ICIP.2014.7026035 ↗
61. Fast multivariate empirical mode decomposition10.1109/ACCESS.2018.2877150 ↗
62. Multiscale image fusion using complex extensions of EMD10.1109/TSP.2008.2011836 ↗
63. Fast discrete curvelet transforms10.1137/05064182X ↗
64. Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems10.1109/TIP.2009.2028250 ↗
65. On intrinsic mode function10.1142/S1793536910000549 ↗
66. Distributed optimization and statistical learning via the alternating direction method of multipliers
67. Kumar, H. (2025, November 20). Bidimensional Empirical Mode Decomposition. MATLAB Central File Exchange. Available online: https://www.mathworks.com/matlabcentral/fileexchange/51981-bidimensional-empirical-mode-decomposition.
68. Advanced processing of optical fringe patterns by automated selective reconstruction and enhanced fast empirical mode decomposition10.1016/j.optlaseng.2013.06.003 ↗
69. Ouwerkerk, R. (2025, February 07). Mriphantom. MATLAB Central File Exchange. Available online: https://www.mathworks.com/matlabcentral/fileexchange/1759-mriphantom.
70. AGH University of Kraków (2025, November 15). MRI Quality Data Repository. Available online: https://home.agh.edu.pl/~pioro/mriqdata/.
71. Obuchowicz, R., Oszust, M., and Piorkowski, A. (2020). Interobserver variability in quality assessment of magnetic resonance images. BMC Med. Imaging, 20.10.1186/s12880-020-00505-z ↗
72. Analysis and evaluation of image quality metrics
73. Image quality assessment: From error visibility to structural similarity10.1109/TIP.2003.819861 ↗
74. Hore, A., and Ziou, D. (2010, January 23–26). Image quality metrics: PSNR vs. SSIM. Proceedings of the 20th International Conference on Pattern Recognition, Istanbul, Turkey.10.1109/ICPR.2010.579 ↗
75. Multiscale structural similarity for image quality assessment10.1109/ACSSC.2003.1292216 ↗
76. Making a “completely blind” image quality analyzer10.1109/LSP.2012.2227726 ↗
77. No-reference image quality assessment in the spatial domain10.1109/TIP.2012.2214050 ↗
78. Venkatanath, N., Praneeth, D., Bh, Y., Channappayya, S.S., and Medasani, S.S. (March, January 27). Blind image quality evaluation using perception based features. Proceedings of the 2015 Twenty First National Conference on Communications (NCC), Mumbai, India.10.1109/NCC.2015.7084843 ↗
79. Information entropy measure for evaluation of image quality10.1007/s10278-007-9044-5 ↗
80. Comparative Analysis of Noise Estimation Methods in Computed Tomography Images: Histogram Analysis, L2-Norm and SSIM, and CNN-Based Classification with ResNet5010.1016/j.dsp.2025.105242 ↗