Fine-Tuning a Personalized OpenBioLLM Using Offline Reinforcement Learning
Source abstract
Abstract
In the past decade, personalized treatment has become increasingly significant; however, the individualized care provided by physicians incurs substantial labor costs. The advancement of artificial intelligence, particularly the emergence of large language models, offers promising prospects for personalized treatment. These models have the potential to create intelligent agents capable of delivering tailored medical care. Nonetheless, current large language models face challenges in achieving precise treatment recommendations and optimizing treatment strategies. This study aims to enhance the accuracy of medical large language models by employing representation learning, inverse reinforcement learning, and offline reinforcement learning techniques for fine-tuning. The fine-tuned models are capable of generating personalized treatment plans. Through experiments on the mechanical ventilation therapy dataset constructed from the MIMIC-III database, we found that the similarity between the treatment actions suggested by the fine-tuned models and those of clinical physicians reaches 90.4% in the survival dataset, while it decreases to 72.3% in the mortality dataset. These results suggest that fine-tuned models are able to effectively capture individual patient information and provide treatment strategies that differ from routine clinical practice in complex situations, rather than merely mimicking physician behavior. Nevertheless, we emphasize that the recommendations of the model should be used as an auxiliary tool for physician decision making, and the final medical decision still needs to be comprehensively considered in combination with the patient’s clinical background, medical history, and autonomy.
Source: crossref · Quality: baseline
Research context
OpenAlex topics: Neural Networks and Applications · Reinforcement Learning in Robotics · Data Stream Mining Techniques
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
School of Computer Science (National Pilot Software Engineering School), Beijing University of Posts and Telecommunications, Xitucheng Road 10, Haidian, Beijing 100876, China
References (27)
Show source-provided references
1. Precision medicine, AI, and the future of personalized health care10.1111/cts.12884 ↗
2. Achiam, J., Adler, S., Agarwal, S., Ahmad, L., Akkaya, I., Aleman, F.L., Almeida, D., Altenschmidt, J., Altman, S., and McGrew, B. (2023). Gpt-4 technical report. arXiv.
3. Zhang, P., Shi, J., and Kamel Boulos, M.N. (2024). Generative ai in medicine and healthcare: Moving beyond the ‘peak of inflated expectations’. Future Internet, 16.10.20944/preprints202409.0311.v2 ↗
4. Neural discrete representation learning
5. A survey of inverse reinforcement learning: Challenges, methods and progress10.1016/j.artint.2021.103500 ↗
6. Levine, S., Kumar, A., Tucker, G., and Fu, J. (2020). Offline reinforcement learning: Tutorial, review, and perspectives on open problems. arXiv.
7. MIMIC-III, a freely accessible critical care database10.1038/sdata.2016.35 ↗
8. Reinforcement learning for intelligent healthcare applications: A survey10.1016/j.artmed.2020.101964 ↗
9. Reinforcement learning in healthcare: A survey10.1145/3477600 ↗
10. Machine learning and artificial intelligence in research and healthcare10.1016/j.injury.2022.01.046 ↗
11. Sutton, R.S., and Barto, A.G. (2018). Reinforcement Learning: An Introduction, MIT Press.
12. Development and validation of a reinforcement learning algorithm to dynamically optimize mechanical ventilation in critical care10.1038/s41746-021-00388-6 ↗
13. Peng, X., Ding, Y., Wihl, D., Gottesman, O., Komorowski, M., Lehman, L., Ross, A., Faisal, A., and Doshi-Velez, F. (2019, January 16–20). Improving Sepsis Treatment Strategies by Combin- ing Deep and Kernel-Based Reinforcement Learning. Proceedings of the AMIA Annual Symposium Proceedings, Washington, DC, USA.
14. Kondrup, F., Jiralerspong, T., Lau, E., De Lara, N., Shkrob, J., Tran, M.D., Precup, D., and Basu, S. (2023, January 7–14). Towards Safe Mechanical Ventilation Treatment Using Deep Offline Reinforcement Learning. Proceedings of the AAAI Conference on Artificial Intelligence, Washington, DC, USA.10.1609/aaai.v37i13.26862 ↗
15. Yuan, Y., Shi, J., Yang, J., Li, C., Cai, Y., and Tang, B. (2023, January 5–8). Conservative Q-Learning for Mechanical Ventilation Treatment Using Diagnose Transformer-Encoder. Proceedings of the 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Istanbul, Turkiye.10.1109/BIBM58861.2023.10385663 ↗
16. Killian, T.W., Zhang, H., Subramanian, J., Fatemi, M., and Ghassemi, M. (2020). An empirical study of representation learning for reinforcement learning in healthcare. arXiv.
17. Shi, J., Yuan, Y., Cai, Y., Han, R., Zhao, Z., and Shi, Z. (2024, January 24–27). InfCTI-ImpCTI: Inferring and Implementing Clinicians’ Treatment Intentions. Proceedings of the Annual Meeting of the Cognitive Science Society, Rotterdam, The Netherlands.
18. Chan, A.J., and van der Schaar, M. (2021). Scalable bayesian inverse reinforcement learning. arXiv.
19. Ankit Pal, M.S. (2025, February 14). OpenBioLLMs: Advancing OpenSource Large Language Models for Healthcare and Life Sciences. Hugging Face Repository. Available online: https://huggingface.co/aaditya/Llama3-OpenBioLLM-70B.
20. Fine-Tuning Large Language Models for Specialized Use Cases10.1016/j.mcpdig.2024.11.005 ↗
21. Singhal, K., Tu, T., Gottweis, J., Sayres, R., Wulczyn, E., Amin, M., Hou, L., Clark, K., Pfohl, S.R., and Natarajan, V. (2025). Toward expert-level medical question answering with large language models. Nat. Med., 1–8.10.1038/s41591-024-03423-7 ↗
22. PharmaSimText: A Text-Based Educational Playground filled with RL-LLM Agents That Work Together Even in Disagreement
23. AlShibli, A., Bazi, Y., Al Rahhal, M.M., and Zuair, M. (2025). Vision-BioLLM: Large vision language model for visual dialogue in biomedical imagery. Biomed. Signal Process. Control, 103.10.1016/j.bspc.2024.107437 ↗
24. Wu, J., Dong, H., Li, Z., Wang, H., Li, R., Patra, A., Dai, C., Ali, W., Scordis, P., and Wu, H. (2024). A hybrid framework with large language models for rare disease phenotyping. BMC Med Inform. Decis. Mak., 24.10.1186/s12911-024-02698-7 ↗
25. Conservative q-learning for offline reinforcement learning
26. Chain-of-thought prompting elicits reasoning in large language models
27. Haarnoja, T., Zhou, A., Abbeel, P., and Levine, S. (2018, January 10–15). Soft actor-critic: Off-policy maximum entropy deep reinforcement learning with a stochastic actor. Proceedings of the International Conference on Machine Learning, PMLR, Stockholm, Sweden.