Multi-Focus Microscopy Image Fusion Based on Swin Transformer Architecture
Source abstract
Abstract
In this study, we introduce the U-Swin fusion model, an effective and efficient transformer-based architecture designed for the fusion of multi-focus microscope images. We utilized the Swin-Transformer with shifted window and path merging as the encoder for extracted hierarchical context features. Additionally, a Swin-Transformer-based decoder with patch expansion was designed to perform the un-sampling operation, generating the fully focused image. To enhance the performance of the feature decoder, the skip connections were applied to concatenate the hierarchical features from the encoder with the decoder up-sample features, like U-net. To facilitate comprehensive model training, we created a substantial dataset of multi-focus images, primarily derived from texture datasets. Our modulators demonstrated superior capability for multi-focus image fusion to achieve comparable or even better fusion images than the existing state-of-the-art image fusion algorithms and demonstrated adequate generalization ability for multi-focus microscope image fusion. Remarkably, for multi-focus microscope image fusion, the pure transformer-based U-Swin fusion model incorporating channel mix fusion rules delivers optimal performance compared with most existing end-to-end fusion models.
Source: crossref · Quality: baseline
Research context
OpenAlex topics: Advanced Image Fusion Techniques · Image Processing Techniques and Applications · Photoacoustic and Ultrasonic Imaging
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
School of Electronic Science and Engineering, Nanjing University, Nanjing 210093, China
Yangtze Delta Region Institute of Tsinghua University, Jiaxing 314006, China
Institute of Advanced Technology, Nanjing University of Posts and Telecommunications, Nanjing 210023, China
Funding
Key R&D Program of Zhejiang Province
References (79)
Show source-provided references
1. Model-Based 2.5-D Deconvolution for Extended Depth of Field in Brightfield Microscopy10.1109/TIP.2008.924393 ↗
2. Zhi-guo, J., Dong-bing, H., Jin, C., and Xiao-kuan, Z. (2004, January 18–20). A Wavelet Based Algorithm for Multi-Focus Micro-Image Fusion. Proceedings of the Third International Conference on Image and Graphics (ICIG’04), Hong Kong, China.
3. Optimized Ensemble Decision-Based Multi-Focus Imagefusion Using Binary Genetic Grey-Wolf Optimizer in Camera Sensor Networks10.1007/s11042-016-4312-3 ↗
4. Chen, Z., Wang, D., Gong, S., and Zhao, F. (2017, January 25–26). Application of Multi-Focus Image Fusion in Visual Power Patrol Inspection. Proceedings of the 2017 IEEE 2nd Advanced Information Technology, Electronic and Automation Control Conference (IAEAC), Chongqing, China.10.1109/IAEAC.2017.8054302 ↗
5. Song, Y., Li, M., Li, Q., and Sun, L. (2006, January 17–20). A New Wavelet Based Multi-Focus Image Fusion Scheme and Its Application on Optical Microscopy. Proceedings of the 2006 IEEE International Conference on Robotics and Biomimetics, Kunming, China.10.1109/ROBIO.2006.340210 ↗
6. Multi-Focus Image Fusion with Dense SIFT10.1016/j.inffus.2014.05.004 ↗
7. Multi-Focus Image Fusion Using a Morphology-Based Focus Measure in a Quad-Tree Structure10.1016/j.inffus.2012.01.007 ↗
8. A Region-Based Multi-Sensor Image Fusion Scheme Using Pulse-Coupled Neural Network10.1016/j.patrec.2006.05.004 ↗
9. Robust Sparse Representation Combined with Adaptive PCNN for Multifocus Image Fusion10.1109/ACCESS.2018.2822688 ↗
10. Robust Sparse Representation Based Multi-Focus Image Fusion with Dictionary Construction and Local Spatial Consistency10.1016/j.patcog.2018.06.003 ↗
11. Sparse Representation Based Multi-Sensor Image Fusion for Multi-Focus and Multi-Modality Images: A Review10.1016/j.inffus.2017.05.006 ↗
12. Amin-Naji, M., and Aghagolzadeh, A. (2017). Multi-Focus Image Fusion Using VOL and EOL in DCT Domain. arXiv.10.1109/IranianMVIP.2017.8342367 ↗
13. Multi-Focus Image Fusion in DCT Domain Using Variance and Energy of Laplacian and Correlation Coefficient for Visual Sensor Networks
14. Kou, L., Zhang, L., Zhang, K., Sun, J., Han, Q., and Jin, Z. (2018). A Multi-Focus Image Fusion Method via Region Mosaicking on Laplacian Pyramids. PLoS ONE, 13.10.1371/journal.pone.0191085 ↗
15. Wang, H. (2018). Multi-Focus Image Fusion Algorithm Based on Focus Detection in Spatial and NSCT Domain. PLoS ONE, 13.10.1371/journal.pone.0204225 ↗
16. Multi-Scale Guided Image and Video Fusion: A Fast and Efficient Approach10.1007/s00034-019-01131-z ↗
17. Multi-Scale Weighted Gradient-Based Fusion for Multi-Focus Images10.1016/j.inffus.2013.11.005 ↗
18. Multi-Exposure and Multi-Focus Image Fusion in Gradient Domain10.1142/S0218126616501231 ↗
19. A General Framework for Image Fusion Based on Multi-Scale Transform and Sparse Representation10.1016/j.inffus.2014.09.004 ↗
20. Li, H., Nie, R., Zhou, D., and Gou, X. (2018, January 27–29). Convolutional Neural Network Based Multi-Focus Image Fusion. Proceedings of the 2nd International Conference on Algorithms, Computing and Systems, Beijing, China.10.1145/3242840.3242863 ↗
21. Image Segmentation-Based Multi-Focus Image Fusion through Multi-Scale Convolutional Neural Network10.1109/ACCESS.2017.2735019 ↗
22. FuseGAN: Learning to Fuse Multi-Focus Image via Conditional Generative Adversarial Network10.1109/TMM.2019.2895292 ↗
23. Ensemble of CNN for Multi-Focus Image Fusion10.1016/j.inffus.2019.02.003 ↗
24. Vaswani, A., Shazeer, N., Parmar, N., Uszkoreit, J., Jones, L., Gomez, A.N., Kaiser, Ł., and Polosukhin, I. (2017, January 4–9). Attention Is All You Need. Proceedings of the Advances in Neural Information Processing Systems, Long Beach, CA, USA.
25. Dosovitskiy, A., Beyer, L., Kolesnikov, A., Weissenborn, D., Zhai, X., Unterthiner, T., Dehghani, M., Minderer, M., Heigold, G., and Gelly, S. (2020). An Image Is Worth 16 × 16 Words: Transformers for Image Recognition at Scale. arXiv.
26. Radford, A., Kim, J.W., Hallacy, C., Ramesh, A., Goh, G., Agarwal, S., Sastry, G., Askell, A., Mishkin, P., and Clark, J. (2021, January 18–24). Learning Transferable Visual Models from Natural Language Supervision. Proceedings of the International Conference on Machine Learning, Virtual.
27. Chen, J., Lu, Y., Yu, Q., Luo, X., Adeli, E., Wang, Y., Lu, L., Yuille, A.L., and Zhou, Y. (2021). Transunet: Transformers Make Strong Encoders for Medical Image Segmentation. arXiv.
28. Carion, N., Massa, F., Synnaeve, G., Usunier, N., Kirillov, A., and Zagoruyko, S. (2020, January 23–28). End-to-End Object Detection with Transformers. Proceedings of the European Conference on Computer Vision, Glasgow, UK.10.1007/978-3-030-58452-8_13 ↗
29. Touvron, H., Cord, M., Douze, M., Massa, F., Sablayrolles, A., and Jégou, H. (2021, January 18–24). Training Data-Efficient Image Transformers & Distillation through Attention. Proceedings of the International Conference on Machine Learning, Virtual.
30. Bao, H., Dong, L., Piao, S., and Wei, F. (2021). Beit: Bert Pre-Training of Image Transformers. arXiv.
31. Liu, Z., Lin, Y., Cao, Y., Hu, H., Wei, Y., Zhang, Z., Lin, S., and Guo, B. (2021, January 11–17). Swin Transformer: Hierarchical Vision Transformer Using Shifted Windows. Proceedings of the IEEE/CVF International Conference on Computer Vision, Montreal, BC, Canada.10.1109/ICCV48922.2021.00986 ↗
32. Cao, H., Wang, Y., Chen, J., Jiang, D., Zhang, X., Tian, Q., and Wang, M. (2022, January 23–27). Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation. Proceedings of the European Conference on Computer Vision, Tel Aviv, Israel.10.1007/978-3-031-25066-8_9 ↗
33. Multi-Focus Image Fusion: A Survey of the State of the Art10.1016/j.inffus.2020.06.013 ↗
34. Zhou, Y., Yu, L., Zhi, C., Huang, C., Wang, S., Zhu, M., Ke, Z., Gao, Z., Zhang, Y., and Fu, S. (2022). A Survey of Multi-Focus Image Fusion Methods. Appl. Sci., 12.10.3390/app12126281 ↗
35. Merging Images through Pattern Decomposition10.1117/12.966501 ↗
36. Multisensor Image Fusion Using the Wavelet Transform10.1006/gmip.1995.1022 ↗
37. Adaptive Multi-Focus Image Fusion Using a Wavelet-Based Statistical Sharpness Measure10.1016/j.sigpro.2012.01.027 ↗
38. Yang, B., Li, S., and Sun, F. (2007, January 22–24). Image Fusion Using Nonsubsampled Contourlet Transform. Proceedings of the Fourth International Conference on Image and Graphics (ICIG 2007), Chengdu, China.10.1109/ICIG.2007.124 ↗
39. Multifocus Image Fusion Scheme Based on the Multiscale Curvature in Nonsubsampled Contourlet Transform Domain10.1117/1.OE.54.7.073115 ↗
40. Fusion Technique for Multi-Focus Images Based on NSCT–ISCM10.1016/j.ijleo.2015.07.142 ↗
41. Multi-Focus Image Fusion Based on the Neighbor Distance10.1016/j.patcog.2012.09.012 ↗
42. Multifocus Image Fusion Based on Fast Guided Filter and Focus Pixels Detection10.1109/ACCESS.2019.2909591 ↗
43. Improving Empirical Mode Decomposition Using Support Vector Machines for Multifocus Image Fusion10.3390/s8042500 ↗
44. Multifocus Image Fusion and Restoration with Sparse Representation10.1109/TIM.2009.2026612 ↗
45. Regional Multifocus Image Fusion Using Sparse Representation10.1364/OE.21.005182 ↗
46. Image Fusion for Enhanced Visualization: A Variational Approach10.1007/s11263-009-0206-4 ↗
47. Hong, R., Wang, C., Ge, Y., Wang, M., Wu, X., and Zhang, R. (2007, January 2–5). Salience Preserving Multi-Focus Image Fusion. Proceedings of the 2007 IEEE International Conference on Multimedia and Expo, Beijing, China.10.1109/ICME.2007.4284987 ↗
48. Pixel-Based and Region-Based Image Fusion Schemes Using ICA Bases10.1016/j.inffus.2005.09.001 ↗
49. Multi-Focus Image Fusion Based on Cartoon-Texture Image Decomposition10.1016/j.ijleo.2015.10.098 ↗
50. Multifocus Image Fusion by Combining Curvelet and Wavelet Transform10.1016/j.patrec.2008.02.002 ↗
51. Combination of Images with Diverse Focuses Using the Spatial Frequency10.1016/S1566-2535(01)00038-0 ↗
52. Quadtree-Based Multi-Focus Image Fusion Using a Weighted Focus-Measure10.1016/j.inffus.2014.05.003 ↗
53. High Quality Multi-Focus Image Fusion Using Self-Similarity and Depth Information10.1016/j.optcom.2014.10.031 ↗
54. Algebraic Multi-Grid Based Multi-Focus Image Fusion Using Watershed Algorithm10.1109/ACCESS.2018.2866867 ↗
55. Multi-Focus Image Fusion Based on Spatial Frequency and Morphological Operators
56. Novel Focus Region Detection Method for Multifocus Image Fusion Using Quaternion Wavelet10.1117/1.JEI.22.2.023017 ↗
57. Deep Learning-Based Multi-Focus Image Fusion: A Survey and a Comparative Study
58. Multi-Focus Image Fusion with a Deep Convolutional Neural Network10.1016/j.inffus.2016.12.001 ↗
59. Peña, F.A.G., Fernández, P.D.M., Ren, T.I., Vasconcelos, G.C., and Cunha, A. (2019). A Multiple Source Hourglass Deep Network for Multi-Focus Image Fusion. arXiv.
60. An α-Matte Boundary Defocus Model-Based Cascaded Network for Multi-Focus Image Fusion10.1109/TIP.2020.3018261 ↗
61. Multi-Focus Image Fusion with Siamese Self-Attention Network10.1049/iet-ipr.2019.0883 ↗
62. IFCNN: A General Image Fusion Framework Based on Convolutional Neural Network10.1016/j.inffus.2019.07.011 ↗
63. U2Fusion: A Unified Unsupervised Image Fusion Network10.1109/TPAMI.2020.3012548 ↗
64. Devlin, J., Chang, M.-W., Lee, K., and Toutanova, K. (2018). Bert: Pre-Training of Deep Bidirectional Transformers for Language Understanding. arXiv.
65. Ronneberger, O., Fischer, P., and Brox, T. (2015, January 5–9). U-Net: Convolutional Networks for Biomedical Image Segmentation. Proceedings of the Medical Image Computing and Computer-Assisted Intervention–MICCAI 2015: 18th International Conference, Munich, Germany. Proceedings, Part III 18.
66. Cimpoi, M., Maji, S., Kokkinos, I., Mohamed, S., and Vedaldi, A. (2014, January 23–28). Describing Textures in the Wild. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, Columbus, OH, USA.10.1109/CVPR.2014.461 ↗
67. Deng, J., Dong, W., Socher, R., Li, L.-J., Li, K., and Li, F.-F. (2009, January 20–25). Imagenet: A Large-Scale Hierarchical Image Database. Proceedings of the 2009 IEEE Conference on Computer Vision and Pattern Recognition, Miami, FL, USA.10.1109/CVPR.2009.5206848 ↗
68. Kingma, D.P., and Ba, J. (2014). Adam: A Method for Stochastic Optimization. arXiv.
69. Rethinking Low-Cost Microscopy Workflow: Image Enhancement Using Deep Based Extended Depth of Field Methods
70. Xu, H., Ma, J., Le, Z., Jiang, J., and Guo, X. (2020, January 7–12). Fusiondn: A Unified Densely Connected Network for Image Fusion. Proceedings of the AAAI Conference on Artificial Intelligence, New York, NY, USA.10.1609/aaai.v34i07.6936 ↗
71. MFF-GAN: An Unsupervised Generative Adversarial Network with Adaptive and Gradient Joint Constraints for Multi-Focus Image Fusion10.1016/j.inffus.2020.08.022 ↗
72. Zhang, H., Xu, H., Xiao, Y., Guo, X., and Ma, J. (2020, January 7–12). Rethinking the Image Fusion: A Fast Unified Image Fusion Network Based on Proportional Maintenance of Gradient and Intensity. Proceedings of the AAAI Conference on Artificial Intelligence, New York, NY, USA.10.1609/aaai.v34i07.6975 ↗
73. SwinFusion: Cross-Domain Long-Range Learning for General Image Fusion via Swin Transformer10.1109/JAS.2022.105686 ↗
74. MUFusion: A General Unsupervised Image Fusion Network Based on Memory Unit10.1016/j.inffus.2022.11.010 ↗
75. ZMFF: Zero-Shot Multi-Focus Image Fusion10.1016/j.inffus.2022.11.014 ↗
76. Complex Wavelets for Extended Depth-of-Field: A New Method for the Fusion of Multichannel Microscopy Images10.1002/jemt.20092 ↗
77. NIH Image to ImageJ: 25 Years of Image Analysis10.1038/nmeth.2089 ↗
78. Wang, Z., and Bovik, A.C. (2006). Modern Image Quality Assessment, Springer.10.1007/978-3-031-02238-8 ↗
79. Image Quality Assessment: From Error Visibility to Structural Similarity10.1109/TIP.2003.819861 ↗