journal article·2022-10-14Open access

Survival Prediction of Glioma Patients from Integrated Radiology and Pathology Images Using Machine Learning Ensemble Regression Methods

Faisal Altaf Rathore, Hafiz Saad Khan, Hafiz Mudassar Ali, Marwa Obayya, Saim Rasheed, Lal Hussain, Zaki Hassan Kazmi, Mohamed K. Nour, Abdullah Mohamed, Abdelwahed Motwakel

Applied Sciences· Volume 12· Issue 20

Abstract

Gliomas are tumors of the central nervous system, which usually start within the glial cells of the brain or the spinal cord. These are extremely migratory and diffusive tumors, which quickly expand to the surrounding regions in the brain. There are different grades of gliomas, hinting about their growth patterns and aggressiveness and potential response to the treatment. As part of routine clinical procedure for gliomas, both radiology images (rad), such as multiparametric MR images, and digital pathology images (path) from tissue samples are acquired. Each of these data streams are used separately for prediction of the survival outcome of gliomas, however, these images provide complimentary information, which can be used in an integrated way for better prediction. There is a need to develop an image-based method that can utilise the information extracted from these imaging sequences in a synergistic way to predict patients’ outcome and to potentially assist in building comprehensive and patient-centric treatment plans. The objective of this study is to improve survival prediction outcomes of gliomas by integrating radiology and pathology imaging. Multiparametric magnetic resonance imaging (MRI), rad images, and path images of glioma patients were acquired from The Cancer Imaging Archive. Quantitative imaging features were extracted from tumor regions in rad and path images. The features were given as input to an ensemble regression machine learning pipeline, including support vector regression, AdaBoost, gradient boost, and random forest. The performance of the model was evaluated in several configurations, including leave-one-out, five-fold cross-validation, and split-train-test. Moreover, the quantitative performance evaluations were conducted separately in the complete cohort (n = 171), high-grade gliomas (HGGs), n = 75, and low-grade gliomas (LGGs), n = 96. The combined rad and path features outperformed individual feature types in all the configurations and datasets. In leave-one-out configuration, the model comprising both rad and path features was successfully validated on the complete dataset comprising HGFs and LGGs (R=0.84 p=2.2×10−16). The Kaplan–Meier curves generated on the predictions of the proposed model yielded a hazard ratio of 3.314 [95%CI:1.718−6.394], log−rank(P)=2×10−4 on combined rad and path features. Conclusion: The proposed approach emphasizes radiology experts and pathology experts’ clinical workflows by creating prognosticators upon ‘rad’ radiology images and digital pathology ‘path’ images independently, as well as combining the power of both, also through delivering integrated analysis, that can contribute to a collaborative attempt between different departments for administration of patients with gliomas.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Radiomics and Machine Learning in Medical Imaging · AI in cancer detection · Brain Tumor Detection and Classification

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Computer Science and Information Technology, University of Azad Jammu and Kashmir, Muzaffarabad 13100, Azad Kashmir, Pakistan

Kidney Centre Bahawal Victoria Hospital Bahawalpur, Bahawalpur 63100, Punjab, Pakistan

Rural Health Center (RHC) Roda, District Khushab, Khushab 41021, Punjab, Pakistan

Department of Biomedical Engineering, College of Engineering, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia

Department of Information Technology, Faculty of Computing and IT, King Abdulaziz University, Jeddah 21589, Saudi Arabia

Department of Computer Science & IT, Neelum Campus, University of Azad Jammu and Kashmir, Athmuqam 13230, Azad Kashmir, Pakistan

Department of Computer Science, College of Computing and Information System, Umm Al-Qura University, Mecca 24382, Saudi Arabia

Research Centre, Future University in Egypt, New Cairo 11845, Egypt

Department of Computer and Self Development, Preparatory Year Deanship, Prince Sattam Bin Abdulaziz University, Al-Kharj 16278, Saudi Arabia

Funding

Princess Nourah bint Abdulrahman University Researchers Supporting · Deanship of Scientific Research at Umm Al-Qura University

References (37)

Show source-provided references
1. Survival prediction of glioblastoma patients—are we there yet? A systematic review of prognostic modeling for glioblastoma and its clinical potential10.1007/s10143-020-01430-z ↗
2. Nejatishahidin, N., Fayyazsanavi, P., and Kosecka, J. (2022). Object pose estimation using mid-level visual representations. arXiv.10.1109/IROS47612.2022.9981452 ↗
3. Deep radiomic signature with immune cell markers predicts the survival of glioma patients10.1016/j.neucom.2020.10.117 ↗
4. Combining MRI and Histologic Imaging Features for Predicting Overall Survival in Patients with Glioma10.1148/rycan.2021200108 ↗
5. Rathore, S., Bakas, S., Akbari, H., Shukla, G., Rozycki, M., and Davatzikos, C. (2018, January 27). Deriving stable multi-parametric MRI radiomic signatures in the presence of inter-scanner variations: Survival prediction of glioblastoma via imaging pattern analysis and machine learning techniques. Proceedings of the Medical Imaging 2018: Computer-Aided Diagnosis, SPIE, Houston, TX, USA.
6. Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques10.1093/neuonc/nov127 ↗
7. Overall Survival Prediction in Glioblastoma With Radiomic Features Using Machine Learning10.3389/fncom.2020.00061 ↗
8. Brain tumor segmentation and survival prediction using multimodal MRI scans with deep learning10.3389/fnins.2019.00810 ↗
9. Zhao, G., Jiang, B., Zhang, J., and Xia, Y. (2020). Segmentation then prediction: A multi-task solution to brain tumor segmentation and survival prediction. International MICCAI Brainlesion Workshop, Springer.10.1007/978-3-030-72084-1_44 ↗
10. Overall Survival Prediction of Glioma Patients With Multiregional Radiomics10.3389/fnins.2022.911065 ↗
11. Dynamic architecture based deep learning approach for glioblastoma brain tumor survival prediction10.1016/j.neuri.2022.100062 ↗
12. Overall Survival Prediction for Gliomas Using a Novel Compound Approach10.3389/fonc.2021.724191 ↗
13. Analysis of microscopic images via deep neural networks can predict outcome and IDH and 1p/19q codeletion status in gliomas
14. Rathore, S., Iftikhar, M.A., Gurcan, M.N., and Mourelatos, Z. (2019). Radiopathomics: Integration of radiographic and histologic characteristics for prognostication in glioblastoma. arXiv.10.1093/neuonc/noz175.745 ↗
15. Predicting cancer outcomes from histology and genomics using convolutional networks10.1073/pnas.1717139115 ↗
16. Novel structural descriptors for automated colon cancer detection and grading10.1016/j.cmpb.2015.05.008 ↗
17. Imaging descriptors improve the predictive power of survival models for glioblastoma patients10.1093/neuonc/nos335 ↗
18. Radiomic MRI signature reveals three distinct subtypes of glioblastoma with different clinical and molecular characteristics, offering prognostic value beyond IDH110.1038/s41598-018-22739-2 ↗
19. A comparative study of texture measures with classification based on featured distributions10.1016/0031-3203(95)00067-4 ↗
20. Multiresolution gray-scale and rotation invariant texture classification with local binary patterns10.1109/TPAMI.2002.1017623 ↗
21. A clinical model to estimate the pretest probability of lung cancer, based on 1198 pedigrees in China10.1097/JTO.0b013e3182641b82 ↗
22. Thibault, G., Fertil, B., Navarro, C., Pereira, S., Cau, P., Levy, N., Sequeira, J., and Mari, J.-L. (2009, January 7). Texture Indexes and Gray Level Size Zone Matrix Application to Cell Nuclei Classification. Proceedings of the 10th International Conference on Pattern Recognition and Information Processing, Lisbon, Portugal.
23. Use of gray value distribution of run lengths for texture analysis10.1016/0167-8655(90)90112-F ↗
24. Kairuddin, W.N.H.W., and Mahmud, W.M.H.W. (2017). Texture Feature Analysis for Different Resolution Level of Kidney Ultrasound Images. IOP Conference Series: Materials Science and Engineering, Institute of Physics Publishing.10.1088/1757-899X/226/1/012136 ↗
25. Wu, J., Liu, C., Cui, W., and Zhang, Y. (2019, January 22–24). Personalized Collaborative Filtering Recommendation Algorithm based on Linear Regression. Proceedings of the 2019 IEEE International Conference on Power Data Science (ICPDS), Taizhou, China.10.1109/ICPDS47662.2019.9017166 ↗
26. A Linear Model Based on Principal Component Analysis for Disease Prediction10.1109/ACCESS.2019.2931956 ↗
27. (2021, November 20). Linear Regression Analysis-George A. F. Seber, Alan J. Lee-Google Books. Available online: https://books.google.com.pk/books?hl=en&lr=&id=X2Y6OkXl8ysC&oi=fnd&pg=PR5&dq=G.+A.+Seber+and+A.+J.+Lee,+Linear+regression+analysis+vol.+329:+John+Wiley+%26+Sons,+2012.&ots=sekOy3nPpw&sig=M5wJ9R0tRZ4VuIikX6aFZsWR1dY&redir_esc=y#v=onepage&q&f=false.
28. Lim, H.I. (2019, January 15–19). A linear regression approach to modeling software characteristics for classifying similar software. Proceedings of the 2019 IEEE 43rd Annual Computer Software and Applications Conference (COMPSAC), Milwaukee, WI, USA.10.1109/COMPSAC.2019.00152 ↗
29. Support Vector Method for Function Approximation, Regression Estimation and Signal Processing
30. A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting10.1006/jcss.1997.1504 ↗
31. Schapire, R.E. (2013). Explaining adaboost. Empirical Inference: Festschrift in Honor of Vladimir N. Vapnik, Springer Science & Business Media.10.1007/978-3-642-41136-6_5 ↗
32. Omer, Z.M., and Shareef, H. (2019, January 26–29). Adaptive boosting and bootstrapped aggregation based ensemble machine learning methods for photovoltaic systems output current prediction. Proceedings of the 2019 29th Australasian Universities Power Engineering Conference (AUPEC), Nadi, Fiji.10.1109/AUPEC48547.2019.211856 ↗
33. Stochastic gradient boosting10.1016/S0167-9473(01)00065-2 ↗
34. Random forests10.1023/A:1010933404324 ↗
35. Predicting Pollution Level Using Random Forest: A Case Study of Marilao River in Bulacan Province, Philippines
36. Deep learning versus classical regression for brain tumor patient survival prediction
37. Wijethilake, N., Meedeniya, D., Chitraranjan, C., and Perera, I. (2020, January 26–28). Survival prediction and risk estimation of Glioma patients using mRNA expressions. Proceedings of the 2020 IEEE 20th International Conference on Bioinformatics and Bioengineering (BIBE), Cincinnati, OH, USA.10.1109/BIBE50027.2020.00014 ↗