journal article·2025-06-22Open access

Common Molecular Mechanisms and Biomarkers in Breast, Colon and Ovarian Cancer

Vicente M. García-Cañizares, Alejandro González-Vidal, Antonio M. Burgos-Molina, Silvia Mercado-Sáenz, Francisco Sendra-Portero, Miguel J. Ruiz-Gómez

Applied Sciences· Volume 15· Issue 13

Abstract

Breast, colon, and ovarian cancers are among the most prevalent malignancies worldwide, with distinct clinical features. This study aims to identify key proteins as common biomarkers for breast, colon, and ovarian cancer through protein analysis, molecular mechanisms, and patient sample validation. Data mining from curated databases identified 483 proteins for breast cancer, 521 for colon cancer, and 223 for ovarian cancer. Interaction network analysis revealed shared clusters involved in cancer progression, DNA repair, and cell proliferation. A core set of 27 proteins was found to be common across all three cancer types, participating in key biological processes such as DNA damage response, cell proliferation, and apoptosis. Notably, these proteins are implicated in KEGG pathways linked to multiple cancers. Differential gene expression analysis revealed significant alterations in the expressions of MSH2 and KIT across the three cancers, suggesting their potential as common biomarkers. The high expression of these proteins was associated with better survival outcomes, highlighting their potential as common biomarkers for breast, colon, and ovarian cancers. The in-silico methodology integrated various bioinformatic tools—including cluster identification, gene expression profiling, protein network visualization, and biomarker prediction—enhancing the understanding of shared molecular mechanisms and potential therapeutic targets.
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Research context

OpenAlex topics: Genetic factors in colorectal cancer · BRCA gene mutations in cancer · Cancer Genomics and Diagnostics

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Departamento de Radiología y Medicina Física, Facultad de Medicina, Universidad de Málaga, 29010 Málaga, Spain

Instituto de Investigación Biomédica de Málaga y Plataforma en Nanomedicina–IBIMA Plataforma BIONAND, Málaga TechPark, 29590 Málaga, Spain

Departamento de Especialidades Quirúrgicas, Bioquímica e Inmunología, Facultad de Medicina, Universidad de Málaga, 29010 Málaga, Spain

Departamento de Fisiología Humana, Histología Humana, Anatomía Patológica y Educación Físico Deportiva, Facultad de Medicina, Universidad de Málaga, 29010 Málaga, Spain

References (41)

Show source-provided references
2. Familial clustering of colon, breast, uterine, and ovarian cancers as assessed by family history10.1002/gepi.1370100404 ↗
3. Increased risk of colorectal cancer in patients diagnosed with breast cancer in women10.1016/j.canep.2016.01.006 ↗
4. Patients with breast cancer may be at higher risk of colorectal neoplasia
5. Breast and ovarian cancers: A survey and possible roles for the cell surface heparan sulfate proteoglycans10.1369/0022155411428469 ↗
6. The role of hereditary nonpolyposis colorectal cancer in the management of familial ovarian cancer10.1097/01.gim.0000241895.20390.c5 ↗
7. Iorga, C., Iorga, C.R., Grigorescu, A., Bengulescu, I., Constantin, T., and Strambu, V. (2024). Synchronous breast and colorectal malignant tumors-A systematic review. Life, 14.10.3389/fendo.2023.1191914 ↗
8. Aggregation of ovarian cancer with breast, ovarian, colorectal, and prostate cancer in first-degree relatives10.1093/aje/kwh103 ↗
9. Primary breast and colon cancer associated with endometrial or ovarian cancer
10. Synchronous ovarian and breast cancers with a novel variant in BRCA2 gene: A case report
11. Second malignant neoplasms among long-term survivors of ovarian cancer
12. Ovarian metastasis from colorectal carcinoma: A case report and review of the literature
13. Breast metastasis and ovary metastasis of primary colon cancer
14. Second primary neoplasms following ovarian cancer10.1093/jnci/61.5.1195 ↗
15. The diagnosis of a metastatic breast tumor from ovarian cancer by the succession of a p53 mutation: A case report10.1186/s12957-017-1185-5 ↗
16. Risks of cancer in BRCA1-mutation carriers10.1016/S0140-6736(94)91578-4 ↗
17. Profiling of the genetic features of patients with breast, ovarian, colorectal and extracolonic cancers: Association to CHEK2 and PALB2 germline mutations10.1016/j.cca.2023.117695 ↗
18. Xie, Y. (2024). The application and outlook of proteomics in Ovarian Cancer, Breast Cancer, and Colon Cancer. BIO Web Conf., 111.10.1051/bioconf/202411103004 ↗
19. Common cancer biomarkers of breast and ovarian types identified through artificial intelligence10.1111/cbdd.13672 ↗
20. González-Vidal, A., Mercado-Sáenz, S., Burgos-Molina, A.M., Alamilla-Presuel, J.C., Alcaraz, M., Sendra-Portero, F., and Ruiz-Gómez, M.J. (2023). Molecular Mechanisms of Resistance to Ionizing Radiation in S. cerevisiae and Its Relationship with Aging, Oxidative Stress, and Antioxidant Activity. Antioxidants, 12.10.3390/antiox12091690 ↗
21. The STRING database in 2023: Protein–protein association networks and functional enrichment analyses for any sequenced genome of interest10.1093/nar/gkac1000 ↗
22. Oliveros, J.C., and Venny (2025, February 07). An Interactive Tool for Comparing Lists with Venn’s Diagrams. 2007–2015. Available online: https://bioinfogp.cnb.csic.es/tools/venny/index.html.
23. KEGG Mapper for inferring cellular functions from protein sequences10.1002/pro.3711 ↗
24. Garcia-Moreno, A., López-Domínguez, R., Villatoro-García, J.A., Ramirez-Mena, A., Aparicio-Puerta, E., Hackenberg, M., Pascual-Montano, A., and Carmona-Saez, P. (2022). Functional Enrichment Analysis of Regulatory Elements. Biomedicines, 10.10.3390/biomedicines10030590 ↗
25. Tang, D., Chen, M., Huang, X., Zhang, G., Zeng, L., Zhang, G., Wu, S., and Wang, Y. (2023). SRplot: A free online platform for data visualization and graphing. PLoS ONE, 18.10.1371/journal.pone.0294236 ↗
26. Metascape provides a biologist-oriented resource for the analysis of systems-level datasets10.1038/s41467-019-09234-6 ↗
27. GEPIA2: An enhanced web server for large-scale expression profiling and interactive analysis10.1093/nar/gkz430 ↗
28. Secondary breast, ovarian, and uterine cancers after colorectal cancer: A nationwide population-based cohort study in Korea10.1097/DCR.0000000000001203 ↗
29. Inherited forms of colorectal, breast, and ovarian cancer: Guidelines for surveillance10.1016/S1055-3207(18)30499-X ↗
30. 30 year experience of index case identification and outcomes of cascade testing in high-risk breast and colorectal cancer predisposition genes10.1038/s41431-021-01011-8 ↗
31. Barili, V., Ambrosini, E., Bortesi, B., Minari, R., De Sensi, E., Cannizzaro, I.R., Taiani, A., Michiara, M., Sikokis, A., and Boggiani, D. (2024). Genetic Basis of Breast and Ovarian Cancer: Approaches and Lessons Learnt from Three Decades of Inherited Predisposition Testing. Genes, 15.10.3390/genes15020219 ↗
32. Targeting p53 pathways: Mechanisms, structures and advances in therapy10.1038/s41392-023-01347-1 ↗
33. Evaluation of HER2 immunohistochemistry expression in non-standard solid tumors from a Single-Institution Prospective Cohort10.37349/etat.2024.00265 ↗
34. Kanapathy Pillai, S.K., Tay, A., Nair, S., and Leong, C.O. (2012). Triple-negative breast cancer is associated with EGFR, CK5/6 and c-KIT expression in Malaysian women. BMC Clin. Pathol., 12.10.1186/1472-6890-12-18 ↗
35. Shnaider, P.V., Petrushanko, I.Y., Aleshikova, O.I., Babaeva, N.A., Ashrafyan, L.A., Borovkova, E.I., Dobrokhotova, J.E., Borovkov, I.M., Shender, V.O., and Khomyakova, E. (2023). Expression level of CD117 (KIT) on ovarian cancer extracellular vesicles correlates with tumor aggressiveness. Front. Cell Dev. Biol., 11.10.3389/fcell.2023.1057484 ↗
36. Pathogenic germline variants in cancer predisposition genes in patients with multiple primary cancers in an Asian population and the role of extended panel genetic testing10.1016/j.esmoop.2025.104495 ↗
37. Prevalence of constitutional pathogenic variant in a cohort of 348 patients with multiple primary cancer addressed in oncogenetic consultation10.1002/mgg3.70086 ↗
38. A case of multiple advanced colon cancers with spontaneous regression of only one lesion after biopsy: A case report and literature review10.1007/s12328-025-02106-1 ↗
39. Identification of new proteins related with cisplatin resistance in Saccharomyces cerevisiae10.1007/s00253-021-11137-w ↗
40. Factors and molecular mechanisms of radiation resistance in cancer cells10.1080/09553002.2022.2047825 ↗
41. Identifying safeguards disabled by Epstein-Barr virus infections in genomes from patients with breast cancer: Chromosomal bioinformatics analysis10.2196/50712 ↗