journal article·2025-01-14Open access

Micromechanical Characterization of Diatom Frustules of Multiple Origin

Daniel Zuluaga-Astudillo, Juan Carlos Ruge, Bernardo Caicedo-Hormaza

Applied Sciences· Volume 15· Issue 2

Abstract

The siliceous structure that protects diatoms, called frustule, is the main component of diatom sedimentary soils. These particles’ physical and mechanical characteristics are challenging, given their geometric conditions of only a few microns. For this evaluation, specialized tools must be used, such as the Scanning Electron Microscope (SEM), the Atomic Force Microscope (AFM) and X-ray dispersion (XRD), among others. The bibliographic references show significant variability in the “load-deformation” behavior in frustules, diatoms or their organic components. Technical background information usually presents information on a single type of species. This research demonstrated the characterization and micromechanical evaluation of frustules of three morphologically distinguishable species of diatoms (Colombian, Mexican and Peruvian origin). The results showed similarities in the chemical composition of the three samples. The displacement records are variable depending on the species for the same load range. The location of the load application points by AFM on the different types of frustules is presented. The most significant deformation in the Mexican species and the regularity in the results of the Peruvian species stand out. Young’s moduli were also calculated by applying the Hertz Model, which had the highest values in the Colombian sample.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Diatoms and Algae Research · Biocrusts and Microbial Ecology · Protist diversity and phylogeny

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Programa de Diseño y Construcción de Vías y Aeropistas, Escuela de Ingenieros Militares, Ejército de Colombia, Bogotá 111611, Colombia

Programa de Doctorado en Ingeniería, Universidad Militar Nueva Granada, Bogotá 110111, Colombia

Departamento de Ingeniería Civil y Ambiental, Universidad de los Andes, Bogotá 110311, Colombia

Funding

Nueva Granada Military University

References (65)

Show source-provided references
1. Lutynski, M., Sakiewicz, P., and Lutynski, S. (2019). Characterization of Diatomaceous Earth and Halloysite Resources of Poland. Minerals, 9.10.3390/min9110670 ↗
2. Silica use through time: Macroevolutionary change in the morphology of the diatom fustule10.1080/01490451003702941 ↗
3. Biotribology inspires new technologies10.1016/S1748-0132(07)70141-X ↗
4. Flower, R.J. (2013). Diatomites: Their Formation, Distribution, and Uses, Elsevier B.V.. [2nd ed.].10.1016/B978-0-444-53643-3.00220-X ↗
5. Compresibilidad y propiedades dinámicas de suelos diatomáceos de Mejillones Compressibility and dynamic properties of diatomaceous soils of Mejillones Introducción Sector de estudio Material de ensayo10.4067/S0718-28132019000100006 ↗
6. Rice husk ash and spent diatomaceous earth as a source of silica to fabricate a geopolymeric binary binder10.1016/j.jclepro.2016.01.057 ↗
7. Ficha Técnica (2021). TIERRA DE DIATOMEAS—AGROPULÍ—TDDA Silicio asimilable: Dióxido de Silicio (SiO2) Amorfo. Enmienda de Uso Agrícola, Agropuli.
8. Meehan, C., Kumar, S., Pando, M., and Coe, J. (2019, January 24–27). Oedometric Behavior of a Diatom-Kaolin Mixture. Proceedings of the Geo-Congress 2019, Philadelphia, PA, USA.
9. Joseph, S. (2007). Diatoms: Living in a Constructal Environment. Algae and Cyanobacteria in Extreme Environments, Springer.
10. Study on Tribological Mechanism for Multi-layer Porous Structure of Diatom Frustule10.1007/s00248-014-0485-3 ↗
11. Architecture and material properties of diatom shells provide effective mechanical protection10.1038/nature01416 ↗
12. The role of sediment composition and behavior under dynamic loading conditions on slope failure initiation: A study of a subaqueous landslide in earthquake-prone South-Central Chile10.1007/s00531-015-1144-8 ↗
13. Locat, J., and Tanaka, H. (2001, January 1). A new class of soils: Fossiliferous soils?. Proceedings of the XV International Conference of Soil Mechanics and Geotechnical Engineering, Istanbul, Turkey.
14. Microscopía electrónica de barrido en la caracterización de materiales
15. The significance of scanning electron microscopy (SEM) analysis on the microstructure of improved clay: An overview10.1515/geo-2020-0145 ↗
16. Characterization of the Blessington sand geotechnical test site10.3934/geosci.2019.2.145 ↗
17. Mineralogical, microstructural and porosimetry analysis in three different clayey soils10.1088/1742-6596/1388/1/012014 ↗
18. Influence of diatom microfossils on sediment shear strength and slope stability
19. Compressibility and creep of a diatomaceous soil10.1016/j.enggeo.2019.105145 ↗
20. Atomic force microscopy (AFM) application to diatom study: Review and perspectives10.1007/s10811-017-1177-4 ↗
21. Quantitative imaging of diatoms by PeakForce atomic force microscopy10.1002/sia.5441 ↗
22. Micromechanical and structural properties of a pennate diatom investigated by atomic force microscopy10.1046/j.1365-2818.2001.00887.x ↗
23. In vivo nanoscale atomic force microscopy investigation of diatom adhesion properties10.1179/026708302225003857 ↗
24. The enigmatic consolidation of diatomaceous sediment10.1016/j.margeo.2017.01.006 ↗
25. Ponce, J.F., and Fernández, M. (2014). Diatom Analysis. Climatic and Environmental History of Isla de los Estados, Springer Briefs in Earth System Sciences.10.1007/978-94-007-4363-2 ↗
26. Zepeda, C. (2019). Bacillariophyta Diatomeas Guía Didáctica, Universidad Autónoma del Estado de México.
27. What is diatomite?10.1017/qua.2020.14 ↗
28. Antonides, B.L.E. (1997). Diatomites.
29. Romero, Y. (2009). Diatomitas. Geología, Caracterización y Potencial Uso Industrial, UPTC Publicaciones. [1st ed.].
30. Sardo, A., Orefice, I., Balzano, S., Barra, L., and Romano, G. (2021). Applied sciences Mini-Review: Potential of Diatom-Derived Silica for Biomedical Applications. Appl. Sci., 11.10.3390/app11104533 ↗
31. Characteristic of calcined diatomaceous earth from Aceh Besar District—Indonesia as cementitious binder10.1088/1757-899X/933/1/012008 ↗
32. López, J. (2009). Comportamiento cíclico de suelos diatomáceos. [Master’s Thesis, Universidad Nacional Autónoma de México].
33. Listado de diatomeas (Bacillariophyta) registradas para el mar caribe colombiano
34. Behrensmeyer, A. (2021). Taphonomy. Encyclopedia of Geology, Elsevier. [2nd ed.].10.1016/B978-0-08-102908-4.00120-X ↗
35. Aspects of morphogenesis and function of diatom cell walls with implications for taxonomy10.1007/BF01666388 ↗
36. Characterization of a silicon transporter gene family in Cylindrotheca fusiformis: Sequences, expression analysis, and identification of homologs in other diatoms10.1007/s004380050920 ↗
37. The evolution of silicon transporters in diatoms10.1111/jpy.12441 ↗
38. Diatom species abundance and morphologically-based dissolution proxies in coastal Southern Ocean assemblages10.1016/j.csr.2015.04.012 ↗
39. Silicic acid condensation under the influence of water-soluble polymers: From biology to new materials10.1039/C7RA01310H ↗
40. Silicon uptake in diatoms revisited: A model for saturable and nonsaturable uptake kinetics and the role of silicon transporters10.1104/pp.107.107094 ↗
41. Silicon Metabolism in Diatoms10.1085/jgp.39.1.1 ↗
42. Diatom characteristics of the Far East siliceous organogenic deposits10.1016/j.rgg.2015.05.010 ↗
43. Heterotrophic growth and nutritional aspects of the diatom Cyclotella cryptica (Bacillariophyceae): Effect of some environmental factors10.1016/j.jbiosc.2009.08.480 ↗
44. Rogato, A., and De Tommasi, E. (2020). Physical, Chemical, and Genetic Techniques for Diatom Frustule Modification: Applications in Nanotechnology. Appl. Sci., 10.10.3390/app10238738 ↗
45. Alterations of physical properties and microstructure of marine diatomite owing to variation of diatom content10.1080/1064119X.2022.2046664 ↗
46. Ruge, J., Castro, W., Camacho, J., and Molina, F. (2019). Dependencia de las propiedades de retención de agua en suelos caoliníticos con contenidos de microalgas fosilizadas adicionadas artificialmente. Geotechnical Engineering in the XXI Century: Lessons Learned and Future Challenges, IOP Press. Available online: https://ebooks.iospress.nl/publication/53323.
47. Experimental Study of Macro- and Microbehavior of Natural Diatomite10.1061/(ASCE)1090-0241(2006)132:5(603) ↗
48. Nanostructure of the diatom frustule as revealed by atomic force and scanning electron microscopy10.1046/j.1529-8817.2001.037004543.x ↗
49. Behavior of diatomaceous soil in lacustrine deposits of Bogotá, Colombia10.1016/j.jrmge.2017.10.005 ↗
50. Dobrosielska, M., Dobrucka, R., Gloc, M., Brząkalski, D., Szymański, M., Kurzydłowski, K.J., and Przekop, R.E. (2021). A new method of diatomaceous earth fractionation—A bio-raw material source for epoxy-based composites. Materials, 14.10.20944/preprints202103.0266.v1 ↗
51. Karp-Boss, L., Gueta, R., and Rousso, I. (2014). Judging Diatoms by Their Cover: Variability in Local Elasticity of Lithodesmium undulatum Undergoing Cell Division. PLoS ONE, 9.10.1371/journal.pone.0109089 ↗
52. Atomic force microscopy study of living diatoms in ambient conditions10.1111/j.1365-2818.2003.01275.x ↗
53. Characterization of the Adhesive Mucilages Secreted by Live Diatom Cells using Atomic Force Microscopy10.1078/1434-4610-00080 ↗
54. AFM Nanoindentations of Diatom Biosilica Surfaces10.1021/la062666y ↗
55. An integrated approach for probing the structure and mechanical properties of diatoms: Toward engineered nanotemplates10.1016/j.actbio.2015.07.028 ↗
56. Quantifying diatom aspirations: Mechanical properties of chain-forming specie10.4319/lo.2012.57.6.1789 ↗
57. Nanostructure and nanomechanics of live Phaeodactylum tricornutum morphotypes10.1111/j.1462-2920.2007.01551.x ↗
58. Quantitative Nanomechanical Mapping of Marine Diatom in Seawater Using Peak Force Tapping Atomic Force Microscopy10.1111/j.1529-8817.2011.01093.x ↗
59. Analysis of Nanoindentation Response of Diatom Frustules10.1166/jnn.2007.904 ↗
60. Multi-length scale characterization of frustule showing highly hierarchal structure in the context of understanding their mechanical properties10.1016/j.mtcomm.2022.104741 ↗
61. Investigating the impact models for nanoparticles manipulation based on atomic force microscope (according to contact mechanics)10.1016/j.powtec.2018.11.103 ↗
62. The Hertzian theory in AFM nanoindentation experiments regarding biological samples: Overcoming limitations in data processing10.1016/j.micron.2022.103228 ↗
63. The Hertz Model in AFM Nanoindentation Experiments: Applications in Biological Samples and Biomaterials10.2174/1876402910666180426114700 ↗
64. (2022, May 16). JPK Instruments Determining the Elastic Modulus of Biological Samples Using Atomic Force Microscopy. Available online: https://www.jpk.com/app-technotes-img/AFM/pdf/jpk-app-elastic-modulus.14-1.pdf.
65. The average Young’s modulus as a physical quantity for describing the depth-dependent mechanical properties of cells10.1016/j.mechmat.2021.103846 ↗