journal article·2024-07-23Open access

A Machine Learning Approach to Evaluating the Impact of Natural Oils on Alzheimer’s Disease Progression

Rema M. Amawi, Khalil Al-Hussaeni, Joyce James Keeriath, Naglaa S. Ashmawy

Applied Sciences· Volume 14· Issue 15

Abstract

Alzheimer’s Disease is among the major chronic neurodegenerative diseases that affects more than 50 million people worldwide. This disease irreversibly destroys memory, cognition, and the overall daily activities which occur mainly among the elderly. Few drugs are approved for Alzheimer’s Disease management despite its high prevalence. To date, the available drugs in the market cannot reverse the damage of neurons caused by the disease leading to the exacerbation of symptoms and possibly death. Medicinal plants are considered a rich source of chemical constituents and have been contributing to modern drug discovery in many therapeutic areas including cancer, infectious, cardiovascular, neurodegenerative and Central Nervous System (CNS) diseases. Moreover, essential oils that are extracted from plant organs have been reported for a wide array of biological activities, and their roles as antioxidants, antiaging, cytotoxic, anti-inflammatory, antimicrobial, and enzyme inhibitory activities. This article highlights the promising potential of plants’ essential oils in the discovery of novel therapeutic options for Alzheimer’s Disease and halting its progression. In this article, 428 compounds were reported from the essential oils isolated from 21 plants. A comparative study is carried out by employing a variety of machine learning techniques, validation, and evaluation metrics, to predict essential oils’ efficacy against Alzheimer’s Disease progression. Extensive experiments on essential oil data suggest that a prediction accuracy of up to 82% can be achieved given the proper data preprocessing, feature selection, and model configuration steps. This study underscores the potential of integrating machine learning with natural product research to prioritize and expedite the identification of bioactive essential oils that could lead to effective therapeutic interventions for Alzheimer’s Disease. Further exploration and optimization of machine learning techniques could provide a robust platform for drug discovery and development, facilitating faster and more efficient screening of potential treatments.
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Research context

OpenAlex topics: Medicinal Plants and Neuroprotection · Ethnobotanical and Medicinal Plants Studies · Essential Oils and Antimicrobial Activity

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Mathematics and Sciences Department, Rochester Institute of Technology, Dubai 341055, United Arab Emirates

Computing Sciences Department, Rochester Institute of Technology, Dubai 341055, United Arab Emirates

Electrical Engineering Department, Rochester Institute of Technology, Dubai 341055, United Arab Emirates

Pharmaceutical Sciences Department, College of Pharmacy, Gulf Medical University, Ajman 4184, United Arab Emirates

Pharmacognosy Department, Faculty of Pharmacy, Ain Shams University, Cairo 11566, Egypt

Funding

Rochester Institute of Technology, Dubai

References (66)

Show source-provided references
1. The Value of Plants Used in Traditional Medicine for Drug Discovery
2. The Application of Medicinal Plants in Traditional and Modern Medicine: A Review of Thymus vulgaris10.4236/ijcm.2015.69084 ↗
3. Discovery and resupply of pharmacologically active plant-derived natural products: A review10.1016/j.biotechadv.2015.08.001 ↗
4. Adegboye, O., Field, M., Kupz, A., Pai, S., Sharma, D., Smout, M., Wangchuk, P., Wong, Y., and Loiseau, C. (2021). Natural-Product-Based Solutions for Tropical Infectious Diseases. Clin. Microbiol. Rev., 34.10.1128/CMR.00348-20 ↗
5. Synergistic Effects of Natural Product Combinations in Protecting the Endothelium Against Cardiovascular Risk Factors10.1177/2515690X221113327 ↗
6. Nature brings new avenues to the therapy of central nervous system diseases-An overview of possible treatments derived from natural products10.1007/s11427-019-9587-y ↗
7. Discovery of small-molecule compounds and natural products against Parkinson’s disease: Pathological mechanism and structural modification10.1016/j.ejmech.2022.114378 ↗
8. Ayaz, M.M., Sadiq, A., Junaid, M., Ullah, F., Subhan, F., and Ahmed, J. (2017). Neuroprotective and Anti-Aging Potentials of Essential Oils from Aromatic and Medicinal Plants. Front. Aging Neurosci., 9.10.3389/fnagi.2017.00168 ↗
9. GC-MS analysis and biological activities of Thymus vulgaris and Mentha arvensis essential oil10.1515/tjb-2018-0258 ↗
10. Rahmi, D., Yunilawati, R., Jati, B., Setiawati, I., Riyanto, A., Batubara, I., and Astuti, R. (2021). Antiaging and Skin Irritation Potential of Four Main Indonesian Essential Oils. Cosmetics, 8.10.3390/cosmetics8040094 ↗
11. Anti-Oxidant, Anti-Aging, and Anti-Melanogenic Properties of the Essential Oils from Two Varieties of Alpinia zerumbet10.3390/molecules200916723 ↗
12. Influence of Heating on antioxidant activity and the chemical composition of some spice essential oils10.1016/j.foodchem.2004.03.011 ↗
13. Alzheimer’s Association 2021 Facts and Figures Report
14. Chen, X., Drew, J., Berney, W., and Lei, W. (2021). Neuroprotective Natural Products for Alzheimer’s Disease. Cells, 10.10.3390/cells10061309 ↗
15. Contribution of Alzheimer disease to mortality in the United States10.1212/WNL.0000000000000240 ↗
16. Silva, M., Loures, C., Alves, L., Cruz de Souza, L., Borges, K., and Carvalho, M. (2019). Alzheimer’s disease: Risk factors and potentially protective measures. J. Biomed. Sci., 26.10.1186/s12929-019-0524-y ↗
17. Galantamine: A review of its use in Alzheimer’s disease10.2165/00003495-200060050-00008 ↗
18. Woo, C.C., Miranda, B., Sathishkumar, M., Dehkordi-Vakil, F., Yassa, M.A., and Leon, M. (2023). Overnight olfactory enrichment using an odorant diffuser improves memory and modifies the uncinate fasciculus in older adults. Front. Neurosci., 17.10.3389/fnins.2023.1200448 ↗
19. Olfactory training with older people: Olfactory training
20. Abdel-Hady, H., Morsi, E., and El-wakil, E. (2021). In-vitro Antimicrobial Potentialities of Phylunthus emblica Leaf Extract against Some Human Pathogens. Egypt. J. Chem.10.21608/ejchem.2021.109577.4998 ↗
21. Estimation of nutritional, phytochemical, antioxidant and antibacterial activity of dried fig (Ficus carica)
22. Volatile Constituents of Leaves of Ficus carica Linn. Grown in Egypt10.1080/0972060X.2010.10643827 ↗
23. Nafis, A., Ayoub, K., Chaima, A., Custódio, L., Vitalini, S., Iriti, M., and Hassani, L. (2020). A Comparative Study of the in Vitro Antimicrobial and Synergistic Effect of Essential Oils from Laurus nobilis L. and Prunus armeniaca L. from Morocco with Antimicrobial Drugs: New Approach for Health Promoting Products. Antibiotics, 9.10.3390/antibiotics9040140 ↗
24. Rhizome Essential Oil Composition of Costus Speciosus and its Antimicrobial Properties
25. Flores, M., Saravia, C., Vergara, C., Avila, F., Valdés, H., Ortiz-Viedma, J., and Miranda, J. (2019). Avocado Oil: Characteristics, Properties, and Applications. Molecules, 24.10.3390/molecules24112172 ↗
26. Woolf, A., Wong, M., Eyres, L., Mcghie, T., Lund, C., Olsson, S., Wang, Y., Bulley, C., Wang, M., and Friel, E. (2009). Avocado Oil. Gourmet and Health-Promoting Specialty Oils, Elsevier.10.1016/B978-1-893997-97-4.50008-5 ↗
27. Volatile components of avocado leaves (Persea americana mill) from the Mexican race10.1002/jsfa.2740670109 ↗
28. Chemical Composition, Antioxidant and Antimicrobial Activity of Chamomile Flowers Essential Oil (Matricaria chamomilla L.)10.1080/0972060X.2016.1224689 ↗
29. Comparative study of the chemical composition and antioxidant activity of six essential oils and their components10.1080/14786410802496598 ↗
30. GC-MS analysis and bioactive properties of zingiberis rhizoma essential oil10.31925/farmacia.2020.2.13 ↗
31. Antifungal Activity of Essential Oil of Commiphora molmol Oleo Gum Resin10.1080/0972060X.2018.1492975 ↗
32. Chemical Composition, and Cytotoxic, Antioxidant and Antibacterial Activities of the Essential Oil from Ginseng Leaves
33. Chemical composition of essential oils from the buds and leaves of cultivated hazelnut
34. Construction and Adulteration Detection Based on Fingerprint of Volatile Components in Hazelnut Oil10.12691/jfnr-10-2-10 ↗
35. Lawsonia inermis essential oil: Extraction optimization by RSM, antioxidant activity, lipid peroxydation and antiproliferative effects10.1186/s12944-019-1141-1 ↗
36. Comparison of the Chemical Compositions and Antibacterial Activities of Two Iranian Mustard Essential Oils and Use of these Oils in Turkey Meats as Preservatives
37. GC-MS Investigation of Essential oil and antioxidant activity of Egyptian White Onion (Allium cepa L.)
38. Chemical composition and antimicrobial activity of the essential oil of Rosemary10.1016/j.etap.2011.03.011 ↗
39. A Candidate for Health Promotion, Disease Prevention and Treatment, Common Rue (Ruta graveolens L.), an Important Medicinal plant in Traditional Medicine
40. Volatile Composition of Ruta graveolens L. of North of Iran
41. Chemical Composition of Volatile Oils from the Pericarps of Indian Sandalwood (Santalum album) by Different Extraction Methods
42. Composition of essential oil and biological activity of extracts of Viola odorata L. from central Iran10.1080/14786419.2011.558013 ↗
43. Fahmy, N., Fayez, S., Uba, A., Shariati, M.A., Aljohani, A., El-Ashmawy, I., Batiha, G., Eldahshan, O., Singab, A.N., and Zengin, G. (2023). Comparative GC-MS Analysis of Fresh and Dried Curcuma Essential Oils with Insights into Their Antioxidant and Enzyme Inhibitory Activities. Plants, 12.10.3390/plants12091785 ↗
44. Antibacterial activity and identification by GC/MS of the chemical composition of essential oils of Juniperus phoenecea and Juniperus oxycedrus L. from Western Algeria: Tiaret province
45. Scikit-Learn (2024, May 27). Cross-Validation: Evaluating Estimator Performance. Available online: https://scikit-learn.org/stable/modules/cross_validation.html.
46. Chemical Assessment and in Vitro Antioxidant Capacity of Ficus carica Latex10.1021/jf9039759 ↗
47. Bonesi, M., Tenuta, M.C., Loizzo, M.R., Sicari, V., and Tundis, R. (2019). Potential Application of Prunus armeniaca L. and P. domestica L. Leaf Essential Oils as Antioxidant and of Cholinesterases Inhibitors. Antioxidants, 8.10.3390/antiox8010002 ↗
48. Alahmady, N.F., Alkhulaifi, F.M., Abdullah Momenah, M., Ali Alharbi, A., Allohibi, A., Alsubhi, N.H., and Ahmed Alhazmi, W. (2024). Biochemical characterization of chamomile essential oil: Antioxidant, antibacterial, anticancer and neuroprotective activity and potential treatment for Alzheimer’s disease. Saudi J. Biol. Sci., 31.10.1016/j.sjbs.2023.103912 ↗
49. Ahmed, H.Y., Kareem, S.M., Atef, A., Safwat, N.A., Shehata, R.M., Yosri, M., Youssef, M., Baakdah, M.M., Sami, R., and Baty, R.S. (2022). Optimization of Supercritical Carbon Dioxide Extraction of Saussurea costus Oil and Its Antimicrobial, Antioxidant, and Anticancer Activities. Antioxidants, 11.10.3390/antiox11101960 ↗
50. Effects of Spices (Saffron, Rosemary, Cinnamon, Turmeric and Ginger) in Alzheimer’s Disease10.2174/1567205018666210716122034 ↗
51. Bai, E.W. (2014, January 28–30). Big data: The curse of dimensionality in modeling. Proceedings of the 33rd Chinese Control Conference, Nanjing, China.10.1109/ChiCC.2014.6896586 ↗
52. Gholamy, A., Kreinovich, V., and Kosheleva, O. (2018). Why 70/30 or 80/20 Relation between Training and Testing Sets: A Pedagogical Explanation, The University of Texas at El Paso. UTEP-CS-18-09.
53. Scikit-Learn (2024, May 27). Machine Learning in Python KNeighborsClassifier. Available online: https://scikit-learn.org/stable/modules/generated/sklearn.neighbors.KNeighborsClassifier.html.
54. Scikit-Learn (2024, June 01). Machine Learning in Python Logistic Regression. Available online: https://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LogisticRegression.html.
55. Introduction to machine learning: k-nearest neighbors10.21037/atm.2016.03.37 ↗
56. Pal, A. (2021). Logistic regression: A simple primer. Cancer Res. Stat. Treat., 4.10.4103/crst.crst_164_21 ↗
57. Random forests10.1023/A:1010933404324 ↗
58. Maimon, O., and Rokach, L. (2005). Decision Trees. Data Mining and Knowledge Discovery Handbook, Springer.10.1007/b107408 ↗
59. Random Forests and Decision Trees
60. Jackson, J.E. (2005). A User’s Guide to Principal Components, John Wiley & Sons.
61. Jolliffe, I.T. (2002). Principal Component Analysis for Special Types of Data, Springer.
62. Ragno, A., Baldisserotto, A., Antonini, L., Sabatino, M., Sapienza, F., Baldini, E., Buzzi, R., Vertuani, S., and Manfredini, S. (2021). Machine Learning Data Augmentation as a Tool to Enhance Quantitative Composition–Activity Relationships of Complex Mixtures. A New Application to Dissect the Role of Main Chemical Components in Bioactive Essential Oils. Molecules, 26.10.3390/molecules26206279 ↗
63. Polito, F., Fratianni, F., Nazzaro, F., Amri, I., Kouki, H., Khammassi, M., Hamrouni, L., Malaspina, P., Cornara, L., and Khedhri, S. (2023). Essential Oil Composition, Antioxidant Activity and Leaf Micromorphology of Five Tunisian Eucalyptus Species. Antioxidants, 12.10.3390/antiox12040867 ↗
64. Tan, X., Xu, R., Li, A.P., Li, D., Wang, Y., Zhao, Q., Long, L.P., Fan, Y.Z., Zhao, C.X., and Liu, Y. (2024). Antioxidant and anti-Alzheimer’s disease activities of 1,8-cineole and its cyclodextrin inclusion complex. Biomed. Pharmacother., 175.10.1016/j.biopha.2024.116784 ↗
65. In Vitro and in Vivo Biological Investigations of Camphene and Its Mechanism Insights: A Review10.1080/87559129.2021.1936007 ↗
66. Chen, S.X., Xiang, J.Y., Han, J.X., Feng, Y., Li, H.Z., Chen, H., and Xu, M. (2022). Essential Oils from Spices Inhibit Cholinesterase Activity and Improve Behavioral Disorder in AlCl3 Induced Dementia. Chem. Biodivers., 19.10.1002/cbdv.202100443 ↗