journal article·2020-02-17Open access

Developing a Novel Machine Learning-Based Classification Scheme for Predicting SPCs in Colorectal Cancer Survivors

Wen-Chien Ting, Horng-Rong Chang, Chi-Chang Chang, Chi-Jie Lu

Applied Sciences· Volume 10· Issue 4

Abstract

Colorectal cancer is ranked third and fourth in terms of mortality and cancer incidence in the world. While advances in treatment strategies have provided cancer patients with longer survival, potentially harmful second primary cancers can occur. Therefore, second primary colorectal cancer analysis is an important issue with regard to clinical management. In this study, a novel predictive scheme was developed for predicting the risk factors associated with second colorectal cancer in patients with colorectal cancer by integrating five machine learning classification techniques, including support vector machine, random forest, multivariate adaptive regression splines, extreme learning machine, and extreme gradient boosting. A total of 4287 patients in the datasets provided by three hospital tumor registries were used. Our empirical results revealed that this proposed predictive scheme provided promising classification results and the identification of important risk factors for predicting second colorectal cancer based on accuracy, sensitivity, specificity, and area under the curve metrics. Collectively, our clinical findings suggested that the most important risk factors were the combined stage, age at diagnosis, BMI, surgical margins of the primary site, tumor size, sex, regional lymph nodes positive, grade/differentiation, primary site, and drinking behavior. Accordingly, these risk factors should be monitored for the early detection of second primary tumors in order to improve treatment and intervention strategies.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Multiple and Secondary Primary Cancers · Genetic factors in colorectal cancer · Colorectal Cancer Screening and Detection

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Division of Colorectal Surgery, Department of Surgery, Chung Shan Medical University Hospital, Taichung 40201, Taiwan

Institute of Medicine, Chung Shan Medical University, Taichung 40201, Taiwan

Division of Nephrology, Department of Internal Medicine, Chung Shan Medical University Hospital, Taichung 40201, Taiwan

School of Medicine, Chung Shan Medical University, Taichung 40201, Taiwan

School of Medical Informatics, Chung Shan Medical University & IT office, Chung Shan Medical University Hospital, Taichung 40201, Taiwan

Graduate Institute of Business Administration, Fu Jen Catholic University, Taipei 24205, Taiwan

Artificial Intelligence Development Center, Fu Jen Catholic University, Taipei 24205, Taiwan

References (36)

Show source-provided references
1. Potential preventive effect of lactobacillus acidophilus and lactobacillus plantarum in patients with polyps or colorectal cancer10.1590/s0004-2803.201800000-87 ↗
2. Multiple primary malignancies: A report of two cases
3. Immunosuppression and multiple primary malignancies in kidney-transplanted patients: A single-institute study10.1155/2015/183523 ↗
4. Multiple primary malignancies in patients with hepatocellular carcinoma: A largest series with 26-year follow-up10.1097/MD.0000000000003491 ↗
5. Li, F. (2015). Multiple primary malignancies involving lung cancer. BMC Cancer, 15.10.1186/s12885-015-1733-8 ↗
6. Clinical retrospective analysis of cases with multiple primary malignant neoplasms10.4238/2014.March.12.19 ↗
7. Clinical analysis and prognosis of synchronous and metachronous multiple primary malignant tumors10.1097/MD.0000000000006799 ↗
8. Synchronous and metachronous colorectal cancers: Distinct disease entities or different disease courses?
9. Ensuring quality care for cancer survivors: Implementing the survivorship care plan
10. Multiple primary tumours: Challenges and approaches, a review10.1136/esmoopen-2017-000172 ↗
11. Application of machine learning to predict the recurrence-proneness for cervical cancer10.1007/s00521-013-1359-1 ↗
12. Integration of data mining classification techniques and ensemble learning to identify risk factors and diagnose ovarian cancer recurrence10.1016/j.artmed.2017.06.003 ↗
13. Recurrence impact of primary site and pathologic stage in patients diagnosed with colorectal cancer
14. Developing a novel machine learning-based classification scheme for predicting SPCs in breast cancer survivors10.3389/fgene.2019.00848 ↗
15. Genomic classifier ColoPrint predicts recurrence in stage II colorectal cancer patients more accurately than clinical factors10.1634/theoncologist.2014-0325 ↗
16. Identification and construction of combinatory cancer hallmark-based gene signature sets to predict recurrence and chemotherapy benefit in stage II colorectal cancer10.1001/jamaoncol.2015.3413 ↗
17. Yang, L., Xiong, Z., Xie, Q.K., He, W., Liu, S., and Kong, P. (2018). Second primary colorectal cancer after the initial primary colorectal cancer. BMC Cancer, 18.10.1186/s12885-018-4823-6 ↗
18. Clinical characteristics of second primary cancer in colorectal cancer patients: The impact of colorectal cancer or other second cancer occurring first10.1186/1477-7819-12-73 ↗
19. Second primary colorectal cancers (SPCRCs): Experiences from a large Australian Cancer Registry10.1093/annonc/mdp288 ↗
20. Multivariate adaptive regression splines
21. Multivariate adaptive regression splines and neural network models for prediction of pile drivability10.1016/j.gsf.2014.10.003 ↗
22. Random forests10.1023/A:1010933404324 ↗
23. Yuk, E., Park, S., Park, C.S., and Baek, J.G. (2018). Feature-learning-based printed circuit board inspection via speeded-up robust features and random forest. Appl. Sci., 8.10.3390/app8060932 ↗
24. Vapnik, V.N. (2000). The Nature of Statistical Learning Theory, Springer.10.1007/978-1-4757-3264-1 ↗
25. Li, T., Gao, M., Song, R., Yin, Q., and Chen, Y. (2018). Support vector machine classifier for accurate identification of piRNA. Appl. Sci., 8.10.3390/app8112204 ↗
26. Extreme learning machine: Theory and applications10.1016/j.neucom.2005.12.126 ↗
27. Chen, T., and Guestrin, C. (2016, January 13–17). XGBoost: A Scalable Tree Boosting System. Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, San Francisco, CA, USA.10.1145/2939672.2939785 ↗
28. Gradient boosting machines, a tutorial10.3389/fnbot.2013.00021 ↗
29. Machine learning–XGBoost analysis of language networks to classify patients with epilepsy10.1007/s40708-017-0065-7 ↗
30. Accelerating the XGBoost algorithm using GPU computing10.7717/peerj-cs.127 ↗
31. Milborrow, S., Hastie, T., Tibshirani, R., Miller, A., and Lumley, T. (2019, October 01). Earth: Multivariate Adaptive Regression Splines. Available online: https://www.rdocumentation.org/packages/earth.
32. Liaw, A., and Wiener, M. (2019, October 01). randomForest: Breiman and Cutler’s Random Forests for Classification and Regression. Available online: https://www.rdocumentation.org/packages/randomForest.
33. Meyer, D., Dimitriadou, E., Hornik, K., Weingessel, A., and Leisch, F. (2019, October 01). e1071: Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien, 2017. Available online: https://www.rdocumentation.org/packages/e1071.
34. Gosso, A., and Martinez-de-Pison, F. (2019, October 01). elmNN: Implementation of ELM (Extreme Learning Machine) Algorithm for SLFN (Single Hidden Layer Feedforward Neural Networks). Available online: https://www.rdocumentation.org/packages/elmNN.
35. Kuhn, M., Wing, J., Weston, S., Williams, A., Keefer, C., Engelhardt, A., and Kenkel, B. (2019, October 01). Caret: Classification and Regression Training. Available online: https://www.rdocumentation.org/packages/caret.
36. Chen, T., He, T., Benesty, M., Khotilovich, V., and Tang, Y. (2019, October 01). Xgboost: Extreme Gradient Boosting. Available online: https://www.rdocumentation.org/packages/xgboost.