journal article·2019-11-16Open access

Intelligent Glioma Grading Based on Deep Transfer Learning of MRI Radiomic Features

Chung-Ming Lo, Yu-Chih Chen, Rui-Cian Weng, Kevin Li-Chun Hsieh

Applied Sciences· Volume 9· Issue 22

Abstract

According to a classification of central nervous system tumors by the World Health Organization, diffuse gliomas are classified into grade 2, 3, and 4 gliomas in accordance with their aggressiveness. To quantitatively evaluate a tumor’s malignancy from brain magnetic resonance imaging, this study proposed a computer-aided diagnosis (CAD) system based on a deep convolutional neural network (DCNN). Gliomas from a multi-center database (The Cancer Imaging Archive) composed of a total of 30 grade 2, 43 grade 3, and 57 grade 4 gliomas were used for the training and evaluation of the proposed CAD. Using transfer learning to fine-tune AlexNet, a DCNN, its internal layers, and parameters trained from a million images were transferred to learn how to differentiate the acquired gliomas. Data augmentation was also implemented to increase possible spatial and geometric variations for a better training model. The transferred DCNN achieved an accuracy of 97.9% with a standard deviation of ±1% and an area under the receiver operation characteristics curve (Az) of 0.9991 ± 0, which were superior to handcrafted image features, the DCNN without pretrained features, which only achieved a mean accuracy of 61.42% with a standard deviation of ±7% and a mean Az of 0.8222 ± 0.07, and the DCNN without data augmentation, which was the worst with a mean accuracy of 59.85% with a standard deviation ±16% and a mean Az of 0.7896 ± 0.18. The DCNN with pretrained features and data augmentation can accurately and efficiently classify grade 2, 3, and 4 gliomas. The high accuracy is promising in providing diagnostic suggestions to radiologists in the clinic.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Radiomics and Machine Learning in Medical Imaging · Glioma Diagnosis and Treatment · Brain Tumor Detection and Classification

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Graduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 10675, Taiwan

Graduate Institute of Library, Information and Archival Studies, National Chengchi University, Taipei 11605, Taiwan

Department of Engineering Science and Ocean Engineering, National Taiwan University, Taipei 10617, Taiwan

Taiwan Instrument Research Institute, National Applied Research Laboratories, Taipei 10622, Taiwan

Department of Medical Imaging, Taipei Medical University Hospital, Taipei 10675, Taiwan

Department of Radiology, School of Medicine, College of Medicine, Taipei Medical University, Taipei 10675, Taiwan

References (39)

Show source-provided references
1. The 2007 WHO classification of tumours of the central nervous system10.1007/s00401-007-0243-4 ↗
2. The 2016 World Health Organization Classification of Tumors of the Central Nervous System: A summary10.1007/s00401-016-1545-1 ↗
3. Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas10.1056/NEJMoa1402121 ↗
4. Recurrent Glioblastoma Treated with Recombinant Poliovirus10.1056/NEJMoa1716435 ↗
5. Management of elderly patients with gliomas10.1634/theoncologist.2014-0170 ↗
6. Glioblastoma multiforme and anaplastic astrocytoma pathologic criteria and prognostic implications10.1002/1097-0142(19850901)56:5<1106::AID-CNCR2820560525>3.0.CO;2-2 ↗
7. Improving diagnostic accuracy and interobserver concordance in the classification and grading of primary gliomas10.1002/(SICI)1097-0142(19970401)79:7<1381::AID-CNCR16>3.0.CO;2-W ↗
8. Histopathology, classification, and grading of gliomas10.1002/glia.440150303 ↗
9. Limitations of the World Health Organization classification of childhood supratentorial astrocytic tumors10.1002/(SICI)1097-0142(20000315)88:6<1477::AID-CNCR28>3.0.CO;2-8 ↗
10. Interobserver reproducibility among neuropathologists and surgical pathologists in fibrillary astrocytoma grading10.1016/S0022-510X(00)00274-4 ↗
11. Peripheral compressing artifacts in brain tissue from stereotactic biopsy with sidecutting biopsy needle: A pitfall for adequate glioma grading10.5414/NP300404 ↗
12. National survey of patterns of care for brain-tumor patients10.3171/jns.1989.71.6.0826 ↗
13. Added value of advanced over conventional magnetic resonance imaging in grading gliomas and other primary brain tumors10.1186/s40644-014-0035-8 ↗
14. Quantitative glioma grading using transformed gray-scale invariant textures of MRI10.1016/j.compbiomed.2017.02.012 ↗
15. The assessment of antiangiogenic and antivascular therapies in early-stage clinical trials using magnetic resonance imaging: Issues and recommendations10.1038/sj.bjc.6602550 ↗
16. Grading of supratentorial astrocytic tumors by using the difference of ADC value10.1007/s00234-011-0846-2 ↗
17. Imaging tumor vascular heterogeneity and angiogenesis using dynamic contrast-enhanced magnetic resonance imaging10.1158/1078-0432.CCR-07-0238 ↗
18. Imaging update: New windows, new views10.1158/1078-0432.CCR-07-0936 ↗
19. RETRACTED ARTICLE: Glioma grading: Sensitivity, specificity, positive and negative predictive values of diffusion and perfusion imaging10.1007/s11060-009-9807-6 ↗
20. Magnetic resonance scans should replace biopsies for the diagnosis of diffuse brain stem gliomas: A report from the Children’s Cancer Group
21. Quantitative breast lesion classification based on multichannel distributions in shear-wave imaging10.1016/j.cmpb.2015.09.004 ↗
22. Intensity-invariant texture analysis for classification of bi-rads category 3 breast masses10.1016/j.ultrasmedbio.2015.03.003 ↗
23. Computer-aided diagnosis of breast masses using quantified BI-RADS findings10.1016/j.cmpb.2013.03.017 ↗
24. Classification of brain tumor type and grade using MRI texture and shape in a machine learning scheme10.1002/mrm.22147 ↗
25. Multi-task transfer learning deep convolutional neural network: Application to computer-aided diagnosis of breast cancer on mammograms10.1088/1361-6560/aa93d4 ↗
26. A deep feature fusion methodology for breast cancer diagnosis demonstrated on three imaging modality datasets10.1002/mp.12453 ↗
27. Transfer learning on fused multiparametric MR images for classifying histopathological subtypes of rhabdomyosarcoma10.1016/j.compmedimag.2017.05.002 ↗
28. Krizhevsky, A., Sutskever, I., and Hinton, G.E. (2012, January 3–6). ImageNet classification with deep convolutional neural networks. Proceedings of the 25th International Conference on Neural Information Processing Systems—Volume 1, Lake Tahoe, NV, USA.
29. Glioma grading on conventional mr images: A deep learning study with transfer learning10.3389/fnins.2018.00804 ↗
30. State of the art: Machine learning applications in glioma imaging10.2214/AJR.18.20218 ↗
31. Identifying Medical Diagnoses and Treatable Diseases by Image-Based Deep Learning10.1016/j.cell.2018.02.010 ↗
32. Cubuk, E.D., Zoph, B., Mane, D., Vasudevan, V., and Le, Q.V. (2018). AutoAugment: Learning Augmentation Policies from Data. arXiv.10.1109/CVPR.2019.00020 ↗
33. Comprehensive genomic characterization defines human glioblastoma genes and core pathways10.1038/nature07385 ↗
34. Girshick, R., Donahue, J., Darrell, T., and Malik, J. (2014, January 23–28). Rich feature hierarchies for accurate object detection and semantic segmentation. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, Columbus, OH, USA.10.1109/CVPR.2014.81 ↗
35. Simonyan, K., and Zisserman, A. (2014). Very deep convolutional networks for large-scale image recognition. arXiv.
36. Oquab, M., Bottou, L., Laptev, I., and Sivic, J. (2014, January 23–28). Learning and Transferring Mid-level Image Representations Using Convolutional Neural Networks. Proceedings of the 2014 IEEE Conference on Computer Vision and Pattern Recognition, Columbus, OH, USA.10.1109/CVPR.2014.222 ↗
37. Kohavi, R. (1995, January 20–25). A study of cross-validation and bootstrap for accuracy estimation and model selection. Proceedings of the 14th International Joint Conference on Artificial Intelligence—Volume 2, Montreal, QC, Canada.
38. Computer-aided grading of gliomas based on local and global MRI features10.1016/j.cmpb.2016.10.021 ↗
39. Ye, F., Pu, J., Wang, J., Li, Y., and Zha, H. (2017, January 13–16). Glioma grading based on 3D multimodal convolutional neural network and privileged learning. Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Kansas City, MO, USA.10.1109/BIBM.2017.8217751 ↗