Bioequivalence Studies of Highly Variable Drugs: An Old Problem Addressed by Artificial Neural Networks
Source abstract
Abstract
The bioequivalence (BE) of highly variable drugs is a complex issue in the pharmaceutical industry. The impact of this variability can significantly affect the required sample size and statistical power. In order to address this issue, the EMA and FDA propose the utilization of scaled limits. This study suggests the use of generative artificial intelligence (AI) algorithms, particularly variational autoencoders (VAEs), to virtually increase sample size and therefore reduce the need for actual human subjects in the BE studies of highly variable drugs. The primary aim of this study was to show the capability of using VAEs with constant acceptance limits (80–125%) and small sample sizes to achieve high statistical power. Monte Carlo simulations, incorporating two levels of stochasticity (between-subject and within-subject), were used to synthesize the virtual population. Various scenarios focusing on high variabilities were simulated. The performance of the VAE-generated datasets was compared to the official approaches imposed by the FDA and EMA, using either the constant 80–125% limits or scaled BE limits. To demonstrate the ability of AI generative algorithms to create virtual populations, no scaling was applied to the VAE-generated datasets, only to the actual data of the comparators. Across all scenarios, the VAE-generated datasets demonstrated superior performance compared to scaled or unscaled BE approaches, even with less than half of the typically required sample size. Overall, this study proposes the use of VAEs as a method to reduce the necessity of recruiting large numbers of subjects in BE studies.
Source: crossref · Quality: baseline
Research context
OpenAlex topics: Computational Drug Discovery Methods · Innovative Microfluidic and Catalytic Techniques Innovation · Biosimilars and Bioanalytical Methods
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
Department of Pharmacy, School of Health Sciences, National and Kapodistrian University of Athens, 15784 Athens, Greece
Department of Mathematics and Applied Mathematics, University of Crete, 71003 Heraklion, Greece
Institute of Applied and Computational Mathematics, Foundation for Research and Technology Hellas (FORTH), 70013 Heraklion, Greece
Funding
European Union—NextGenerationEU
References (40)
Show source-provided references
1. EMA (2024, April 14). Rev. 1/Corr **: Committee for Medicinal Products for Human Use (CHMP). Guideline on the Investigation of Bioequivalence. Available online: https://www.ema.europa.eu/en/documents/scientific-guideline/guideline-investigation-bioequivalence-rev1_en.pdf.
2. (2024, April 14). Guidance for Industry: Bioavailability and Bioequivalence Studies Submitted in NDAs or INDs—General Considerations. Draft Guidance, Available online: https://www.fda.gov/media/88254/download.
3. Karalis, V. (2016). Modeling and Simulation in Bioequivalence. Modeling in Biopharmaceutics, Pharmacokinetics and Pharmacodynamics. Homogeneous and Heterogeneous Approaches, Springer International Publishing. [2nd ed.].10.1007/978-3-319-27598-7_10 ↗
4. Sample Size Calculations10.1159/000322830 ↗
5. Practical Guide to Sample Size Calculations: Non-Inferiority and Equivalence Trials10.1002/pst.1716 ↗
6. Methods for Flexible Sample-Size Design in Clinical Trials: Likelihood, Weighted, Dual Test, and Promising Zone Approaches10.1016/j.cct.2015.12.007 ↗
7. Testing Bioequivalence for Multiple Formulations with Power and Sample Size Calculations10.1002/pst.1522 ↗
8. Sample Size Calculations for Risk Equivalence Testing in Pharmacoepidemiology10.1016/S0895-4356(00)00252-3 ↗
9. Sample Size Calculation of Clinical Trials in Geriatric Medicine
10. Optimal Sample Size for Use in Neonatal Pharmacokinetic Studies10.1007/s43441-021-00368-8 ↗
11. Optimal Sample Size Determination for Single-Arm Trials in Pediatric and Rare Populations with Bayesian Borrowing10.1080/10543406.2022.2058529 ↗
12. Ketogenic Diets for Drug-Resistant Epilepsy
13. Sample Size Estimation in Diagnostic Test Studies of Biomedical Informatics10.1016/j.jbi.2014.02.013 ↗
14. Sample Size Determination for Food Sampling10.1016/j.jfp.2023.100134 ↗
15. Subgroup Analyses in Randomized Trials: Risks of Subgroup-Specific Analyses10.1016/j.jclinepi.2003.08.009 ↗
16. Artificial Intelligence to Deep Learning: Machine Intelligence Approach for Drug Discovery10.1007/s11030-021-10217-3 ↗
17. Artificial Intelligence in Medicine10.1308/147870804290 ↗
18. Ossowska, A., Kusiak, A., and Świetlik, D. (2022). Artificial Intelligence in Dentistry—Narrative Review. Int. J. Environ. Res. Public Health, 19.10.3390/ijerph19063449 ↗
19. Artificial Intelligence in Anesthesiology10.1097/ALN.0000000000002960 ↗
20. Artificial Intelligence and Ophthalmology10.4274/tjo.galenos.2020.78989 ↗
21. The Integration of Artificial Intelligence into Clinical Practice10.3390/applbiosci3010002 ↗
22. Papadopoulos, D., and Karalis, V.D. (2023). Variational Autoencoders for Data Augmentation in Clinical Studies. Appl. Sci., 13.10.3390/app13158793 ↗
23. Abdi, H., Valentin, D., and Edelman, B. (1999). Neural Networks, Sage.10.4135/9781412985277 ↗
24. Neural Networks and Their Applications10.1063/1.1144830 ↗
25. Müller, B., Reinhardt, J., and Strickland, M.T. (2012). Neural Networks: An Introduction, Springer Science & Business Media.
26. Doersch, C. (2016). Tutorial on Variational Autoencoders. arXiv, Available online: https://arxiv.org/pdf/1606.05908.pdf.
27. Papadopoulos, D., and Karalis, V.D. (2024). Introducing an Artificial Neural Network for Virtually Increasing the Sample Size of Bioequivalence Studies. Appl. Sci., 14.10.3390/app14072970 ↗
28. An Introduction to Variational Autoencoders10.1561/2200000056 ↗
29. Yu, T., and Zhu, H. (2020). Hyper-Parameter Optimization: A Review of Algorithms and Applications. arXiv, Available online: https://arxiv.org/abs/2003.05689.
30. Advancing AI in Healthcare: A Comprehensive Review of Best Practices10.1016/j.cca.2023.117519 ↗
31. Artificial Intelligence in Healthcare: Past, Present and Future10.1136/svn-2017-000101 ↗
32. AI in Healthcare
33. Synthetic Data in Machine Learning for Medicine and Healthcare10.1038/s41551-021-00751-8 ↗
34. Mahmoud, A.Y., Neagu, D., Scrimieri, D., and Abdullatif, A.R.A. (2023). Early Diagnosis and Personalised Treatment Focusing on Synthetic Data Modelling: Novel Visual Learning Approach in Healthcare. Comput. Biol. Med., 164.10.1016/j.compbiomed.2023.107295 ↗
35. Foster, D. (2023). Generative Deep Learning: Teaching Machines to Paint, Write, Compose, and Play, Karl Friston (Foreword) Oreilly & Associates Inc.. [2nd ed.].
36. On the Reproducibility and Replicability of Deep Learning in Software Engineering
37. Chien, J.-T. (2019). Deep Neural Network. Source Separation and Machine Learning, Elsevier.10.1016/B978-0-12-804566-4.00019-X ↗
38. Reporting Guidelines for Population Pharmacokinetic Analyses10.1007/s10928-015-9417-1 ↗
39. FDA (2024, April 14). Population Pharmacokinetics Guidance for Industry, Available online: https://www.fda.gov/media/128793/download.
40. EMA (2007). Guideline on Reporting the Results of Population Pharmacokinetic Analyses, Committee for Medicinal Products for Human Use (CHMP). Available online: https://www.ema.europa.eu/en/reporting-results-population-pharmacokinetic-analyses-scientific-guideline.