journal article·2023-02-01Open access

A Wrapped Approach Using Unlabeled Data for Diabetic Retinopathy Diagnosis

Xuefeng Zhang, Youngsung Kim, Young-Chul Chung, Sangcheol Yoon, Sang-Yong Rhee, Yong Soo Kim

Applied Sciences· Volume 13· Issue 3

Abstract

Large-scale datasets, which have sufficient and identical quantities of data in each class, are the main factor in the success of deep-learning-based classification models for vision tasks. A shortage of sufficient data and interclass imbalanced data distribution, which often arise in the medical domain, cause modern deep neural networks to suffer greatly from imbalanced learning and overfitting. A diagnostic model of diabetic retinopathy (DR) that is trained from such a dataset using supervised learning is severely biased toward the majority class. To enhance the efficiency of imbalanced learning, the proposal of this study is to leverage retinal fundus images without human annotations by self-supervised or semi-supervised learning. The proposed approach to DR detection is to add an auxiliary procedure to the target task that identifies DR using supervised learning. The added process uses unlabeled data to pre-train the model that first learns features from data using self-supervised or semi-supervised learning, and then the pre-trained model is transferred with the learned parameter to the target model. This wrapper algorithm of learning from unlabeled data can help the model gain more information from samples in the minority class, thereby improving imbalanced learning to some extent. Comprehensive experiments demonstrate that the model trained with the proposed method outperformed the one trained with only the supervised learning baseline utilizing the same data, with an accuracy improvement of 4~5%. To further examine the method proposed in this study, a comparison is conducted, and our results show that the proposed method also performs much better than some state-of-the-art methods. In the case of EyePaCS, for example, the proposed method outperforms the customized CNN model by 9%. Through experiments, we further find that the models trained with a smaller but balanced dataset are not worse than those trained with a larger but imbalanced dataset. Therefore, our study reveals that utilizing unlabeled data can avoid the expensive cost of collecting and labeling large-scale medical datasets.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Retinal Imaging and Analysis · Imbalanced Data Classification Techniques · Digital Imaging for Blood Diseases

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Institute of Clinical Medicine of Jeonbuk National University-Biomedical Research Institute of Jeonbuk National University Hospital, Jeonju 54907, Republic of Korea

Office of Strategic R&D Planning, Ministry of Trade, Industry and Energy, Sejong City 30118, Republic of Korea

Department of Psychiatry, Jeonbuk National University Hospital, Jeonju 54907, Republic of Korea

Industry-Academic Cooperation Foundation, Daejeon University, Daejeon 34520, Republic of Korea

Department of Computer Engineering, Kyungnam University, Changwon 51767, Republic of Korea

Department of Computer Engineering, Daejeon University, Daejeon 34520, Republic of Korea

Funding

Korea Government (MSIT)

References (47)

Show source-provided references
1. Diabetic retinopathy
2. Referable diabetic retinopathy identification from eye fundus images with weighted path for convolutional neural network10.1016/j.artmed.2019.07.002 ↗
3. Lakshminarayanan, V., Kheradfallah, H., Sarkar, A., and Balaji, J.J. (2021). Automated Detection and Diagnosis of Diabetic Retinopathy: A Comprehensive Survey. J. Imaging, 7.10.3390/jimaging7090165 ↗
4. Deep learning for diabetic retinopathy detection and classification based on fundus images: A review10.1016/j.compbiomed.2021.104599 ↗
5. Computer-aided diagnosis of diabetic retinopathy: A review10.1016/j.compbiomed.2013.10.007 ↗
6. Automatic Detection of Diabetic Retinopathy: A Review on Datasets, Methods and Evaluation Metrics10.1109/ACCESS.2020.2980055 ↗
7. Deep-learning-based automatic computer-aided diagnosis system for diabetic retinopathy10.1007/s13534-017-0047-y ↗
8. Automated identification and grading system of diabetic retinopathy using deep neural networks10.1016/j.knosys.2019.03.016 ↗
9. Automatic Detection of Diabetic Retinopathy in Retinal Fundus Photographs Based on Deep Learning Algorithm10.1167/tvst.8.6.4 ↗
10. Tymchenko, B., Marchenko, P., and Spodarets, D. (2020). Deep Learning Approach to Diabetic Retinopathy Detection. arXiv.10.5220/0008970805010509 ↗
11. Alyoubi, W., Abulkhair, M., and Shalash, W. (2021). Diabetic Retinopathy Fundus Image Classification and Lesions Localization System Using Deep Learning. Sensors, 21.10.3390/s21113704 ↗
12. Hagos, M.T., and Kant, S. (2019). Transfer learning based detection of diabetic retinopathy from small dataset. arXiv.
13. CABNet: Category Attention Block for Imbalanced Diabetic Retinopathy Grading10.1109/TMI.2020.3023463 ↗
14. Cortés, S.T., Pava MD, L., Perdómo, O., and González, F.A. (2020). Hybrid deep learning Gaussian process for diabetic retinopathy diagnosis and uncertainty quantification. arXiv.
15. Convolutional neural networks for diabetic retinopathy10.1016/j.procs.2016.07.014 ↗
16. Islam, S.M.S.L., Hasan, M.M.H., and Abdullah, S. (2018). Deep learning based early detection and grading of diabetic retinopathy using retinal fundus images. arXiv.
17. Zhang, D., Bu, W., and Wu, X. (2017, January 4–8). Diabetic retinopathy classification using deeply supervised ResNet. Proceedings of the 2017 IEEE SmartWorld, Ubiquitous Intelligence & Computing, Advanced & Trusted Computed, Scalable Computing & Communications, Cloud & Big Data Computing, Internet of People and Smart City Innovation (SmartWorld/SCALCOM/UIC/ATC/CBDCom/IOP/SCI), San Francisco, CA, USA.10.1109/UIC-ATC.2017.8397469 ↗
18. A Deep Learning Ensemble Approach for Diabetic Retinopathy Detection10.1109/ACCESS.2019.2947484 ↗
19. An ensemble-based system for automatic screening of diabetic retinopathy10.1016/j.knosys.2013.12.023 ↗
20. Automated Diabetic Retinopathy Detection Based on Binocular Siamese-Like Convolutional Neural Network10.1109/ACCESS.2019.2903171 ↗
21. Self-Supervised Feature Learning via Exploiting Multi-Modal Data for Retinal Disease Diagnosis10.1109/TMI.2020.3008871 ↗
22. Ali, R., Hardie, R.C., Narayanan, B.N., and Kebede, T.M. (2022). IMNets: Deep Learning Using an Incremental Modular Network Synthesis Approach for Medical Imaging Applications. Appl. Sci., 12.10.3390/app12115500 ↗
23. Kobat, S.G., Baygin, N., Yusufoglu, E., Baygin, M., Barua, P.D., Dogan, S., Yaman, O., Celiker, U., Yildirim, H., and Tan, R.-S. (2022). Automated Diabetic Retinopathy Detection Using Horizontal and Vertical Patch Division-Based Pre-Trained DenseNET with Digital Fundus Images. Diagnostics, 12.10.3390/diagnostics12081975 ↗
24. A self-training deep neural network for early prediction of cognitive deficits in very preterm infants using brain functional connectome data10.1007/s00247-022-05510-8 ↗
25. Brain tumor segmentation based on the fusion of deep semantics and edge information in multimodal MRI10.1016/j.inffus.2022.10.022 ↗
26. Russakovsky, O., Deng, J., Su, H., Krause, J., Satheesh, S., Ma, S., Huang, Z., Karpathy, A., Khosla, A., and Bernstein, M. (2015). ImageNet large scale visual recognition challenge. arXiv.10.1007/s11263-015-0816-y ↗
27. Do We Need More Training Data?10.1007/s11263-015-0812-2 ↗
28. Deep Learning in Medical Image Analysis10.1146/annurev-bioeng-071516-044442 ↗
29. A survey on deep learning in medical image analysis10.1016/j.media.2017.07.005 ↗
30. Survey on deep learning with class imbalance10.1186/s40537-019-0192-5 ↗
31. Learning from Imbalanced Data10.1109/TKDE.2008.239 ↗
32. The Dangers of False-Positive and False-Negative Test Results: False-Positive Results as a Function of Pretest Probability10.1016/j.cll.2007.12.009 ↗
33. Chapelle, O., Schölkopf, B., and Zien, A. (2006). Semi-Supervised Learning, The MIT Press.10.7551/mitpress/9780262033589.001.0001 ↗
34. Jaiswal, A., Babu, A.R., Zadeh, M.Z., Banerjee, D., and Makedon, F. (2020). A Survey on Contrastive Self-Supervised Learning. Technologies, 9.10.3390/technologies9010002 ↗
35. Yang, X., Song, Z., King, I., and Xu, Z. (2021). A Survey on Deep Semi-Supervised Learning. arXiv.10.1109/TKDE.2022.3220219 ↗
36. EyePACS: An Adaptable Telemedicine System for Diabetic Retinopathy Screening10.1177/193229680900300315 ↗
37. (2022, March 17). OIA-DDR Data for Diabetic Retinopathy Classification. Available online: https://github.com/nkicsl/DDR-dataset.
38. Feedback on a publicly distributed image database: The Messidor database10.5566/ias.1155 ↗
39. He, K., Zhang, X., Ren, S., and Sun, J. (July, January June). Deep residual learning for image recognition. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, Las Vegas, NV, USA.
40. Sun, Z., Fan, C., Sun, X., Meng, Y., Wu, F., and Li, J. (2020). Neural semi-supervised learning for text classification under large-scale pre-training. arXiv.
41. He, K., Fan, H., Wu, Y., Xie, S., and Girshick, R. (2022, January 16). Momentum Contrast for Unsupervised Visual Representation Learning. Proceedings of the IEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), Virtual.
42. Rethinking the value of labels for improving class-imbalanced learning
43. Self supervised contrastive learning for digital histopathology
44. Zhou, B., Cui, Q., Wei, X.-S., and Chen, Z.-M. (2020, January 16). BBN: Bilateral-Branch Network with Cumulative Learning for Long-Tailed Visual Recognition. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, Virtual.10.1109/CVPR42600.2020.00974 ↗
45. Kang, B., Xie, S., Rohrbach, M., Yan, Z., Gordo, A., Feng, J., and Kalantidis, Y. (2019). Decoupling representation and classifier for long-tailed recognition. arXiv.
46. American Academy of Ophthalmology (2002). International Clinical Diabetic Retinopathy Disease Severity Scale Detailed Table, International Council of Ophthalmology.
47. Selvaraju, R.R., Cogswell, M., Das, A., Vedantam, R., Parikh, D., and Batra, D. (2019). Grad-CAM: Visual Explanations from Deep Networks via Gradient-based Localization. arXiv.10.1007/s11263-019-01228-7 ↗