journal article·2019-10-12Open access

Carbon Nanotubes Translocation through a Lipid Membrane and Transporting Small Hydrophobic and Hydrophilic Molecules

Yiyi Gao, Dangxin Mao, Jun Wu, Xiaogang Wang, Zhikun Wang, Guoquan Zhou, Liang Chen, Junlang Chen, Songwei Zeng

Applied Sciences· Volume 9· Issue 20

Abstract

Carbon nanotubes (CNTs) are extensively adopted in the applications of biotechnology and biomedicine. Their interactions with cell membranes are of great importance for understanding the toxicity of CNTs and the application of drug delivery. In this paper, we use atomic molecular dynamics simulations to study the permeation and orientation of pristine and functionalized CNTs in a lipid bilayer. Pristine CNT (PCNT) can readily permeate into the membrane and reside in the hydrophobic region without specific orientation. The insertion of PCNTs into the lipid bilayer is robust and independent on the lengths of PCNTs. Due to the presence of hydroxyl groups on both ends of the functionalized CNT (FCNT), FCNT prefers to stand upright in the lipid bilayer center. Compared with PCNT, FCNT is more suitable to be a bridge connecting the inner and outer lipid membrane. The inserted CNTs have no distinct effects on membrane structure. However, they may block the ion channels. In addition, preliminary explorations on the transport properties of CNTs show that the small hydrophobic molecule carbon dioxide can enter both PCNT and FCNT hollow channels. However, hydrophilic molecule urea is prone to penetrate the PCNT but finds it difficult to enter the FCNT. These results may provide new insights into the internalization of CNT in the lipid membrane and the transport properties of CNTs when embedded therein.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Lipid Membrane Structure and Behavior · Nanopore and Nanochannel Transport Studies · Supramolecular Self-Assembly in Materials

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Optical Engineering, Zhejiang A&F University, Lin’an 311300, China

School of Information and Industry, Zhejiang A&F University, Lin’an 311300, China

Funding

National Natural Science Foundation of China

References (44)

Show source-provided references
1. Promises, facts and challenges for carbon nanotubes in imaging and therapeutics10.1038/nnano.2009.241 ↗
2. Functionalized carbon nanotubes for probing and modulating molecular functions10.1016/j.chembiol.2010.01.009 ↗
3. Near-infrared fluorescence microscopy of single-walled carbon nanotubes in phagocytic cells10.1021/ja0466311 ↗
4. Nanotube molecular transporters: Internalization of carbon nanotube-protein conjugates into mammalian cells10.1021/ja0486059 ↗
5. RNA polymer translocation with single-walled carbon nanotubes10.1021/nl048326j ↗
6. Translocation of bioactive peptides across cell membranes by carbon nanotubes10.1039/b311254c ↗
7. A cell nanoinjector based on carbon nanotubes10.1073/pnas.0700567104 ↗
8. Single-walled carbon nanotubes deliver peptide antigen into dendritic cells and enhance IgG responses to tumor-associated antigens10.1021/nn200182x ↗
9. Single-walled carbon nanotube induces oxidative stress and activates nuclear transcription factor-κB in human keratinocytes10.1021/nl0507966 ↗
10. Pulmonary toxicity of single-wall carbon nanotubes in mice 7 and 90 days after intratracheal instillation10.1093/toxsci/kfg243 ↗
11. Interfacing carbon nanotubes with living cells10.1021/ja060276s ↗
12. Cytotoxicity of carbon nanomaterials: Single-wall nanotube, multi-wall nanotube, and fullerene10.1021/es048729l ↗
13. Global phospholipidomics analysis reveals selective pulmonary peroxidation profiles upon inhalation of single-walled carbon nanotubes10.1021/nn202201j ↗
14. Cytotoxicity of single-walled carbon nanotubes on PC12 cells10.1016/j.tiv.2010.11.010 ↗
15. Multi wall carbon nanotubes induce oxidative stress and cytotoxicity in human embryonic kidney (HEK293) cells10.1016/j.tox.2010.03.017 ↗
16. Direct imaging of single-walled carbon nanotubes in cells10.1038/nnano.2007.347 ↗
17. Carbon nanotubes are able to penetrate plant seed coat and dramatically affect seed germination and plant growth10.1021/nn900887m ↗
18. Stochastic transport through carbon nanotubes in lipid bilayers and live cell membranes10.1038/nature13817 ↗
19. Enhanced water permeability and tunable ion selectivity in subnanometer carbon nanotube porins10.1126/science.aan2438 ↗
20. Selective Transport through the ultrashort carbon nanotubes embedded in lipid bilayers10.1021/acs.jpcc.8b07861 ↗
21. Interaction of graphene and its oxide with lipid membrane: A molecular dynamics simulation study10.1021/acs.jpcc.5b10635 ↗
22. Computer simulation study of fullerene translocation through lipid membranes10.1038/nnano.2008.130 ↗
23. Blocking of carbon nanotube based nanoinjectors by lipids: A simulation study10.1021/nl801217f ↗
24. Embedded single-walled carbon nanotubes locally perturb DOPC phospholipid bilayers10.1021/jp306299x ↗
25. Translocation of C60 and its derivatives across a lipid bilayer10.1021/nl062515f ↗
26. How long a functionalized carbon nanotube can passively penetrate a lipid membrane10.1016/j.carbon.2012.07.018 ↗
27. Kraszewski, S., Bianco, A., Tarek, M., and Ramseyer, C. (2012). Insertion of short amino-functionalized single-walled carbon nanotubes into phospholipid bilayer occurs by passive diffusion. PLoS ONE, 7.10.1371/journal.pone.0040703 ↗
28. How do functionalized carbon nanotubes land on, bind to and pierce through model and plasma membranes10.1039/c3nr03184e ↗
29. Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature10.1016/S0006-3495(97)78845-3 ↗
30. Water conduction through the hydrophobic channel of a carbon nanotube10.1038/35102535 ↗
31. PRODRG: A tool for high-throughput crystallography of protein-ligand complexes10.1107/S0907444904011679 ↗
32. Comparison of simple potential functions for simulating liquid water10.1063/1.445869 ↗
33. A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A10.1002/jcc.20090 ↗
34. GROMACS: A message-passing parallel molecular dynamics implementation10.1016/0010-4655(95)00042-E ↗
35. GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation10.1021/ct700301q ↗
36. Particle mesh Ewald: An Nlog(N) method for Ewald sums in large systems10.1063/1.464397 ↗
37. A smooth particle mesh Ewald method10.1063/1.470117 ↗
38. Molecular dynamics with coupling to an external bath10.1063/1.448118 ↗
39. Canonical sampling through velocity rescaling10.1063/1.2408420 ↗
40. LINCS: A linear constraint solver for molecular simulations10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO;2-H ↗
41. SETTLE: An analytical version of the SHAKE and RATTLE algorithm for rigid water models10.1002/jcc.540130805 ↗
42. Assessing the stability of Alzheimer’s amyloid protofibrils using molecular dynamics10.1021/jp9110794 ↗
43. Calculating potentials of mean force from steered molecular dynamics simulations10.1063/1.1651473 ↗
44. G_whams: A free weighted histogram analysis implementation including robust error and autocorrelation estimates10.1021/ct100494z ↗