Light-Activating PROTACs in Cancer: Chemical Design, Challenges, and Applications
Source abstract
Abstract
Nonselective cell damage remains a significant limitation of radiation therapies in cancer. Decades of successful integration of radiation therapies with other medicinal chemistry strategies significantly improved therapeutic benefits in cancer. Advancing in such technologies also led to the development of specific photopharmcology-based approaches that improved the cancer cell selectivity and provided researchers with spatiotemporal control over the degradation of highly expressed proteins in cancer (proteolysis targeting chimeras, PROTACs) using a monochrome wavelength light source. Two specific strategies that have achieved notable successes are photocage and photoswitchable PROTACs. Photocaged PROTACs require a photolabile protecting group (PPG) that, when radiated with a specific wavelength of light, irreversibly release PPG and induce protein degradation. Thus far, diethylamino coumarin for estrogen-related receptor α (ERRα), nitropiperonyloxymethyl (BRD4 bromodomain protein), and 4,5-dimethoxy-2-nitrobenzyl for (BRD4 bromodomain protein, as well as BTK kinase protein) were successfully incorporated in photocaged PROTACs. On the other hand, photoswitches of photoswitchable PROTACs act as an actual ON/OFF switch to target specific protein degradation in cancer. The ON/OFF function of photoswitches in PROTACs (as photoswitchable PROTACs) provide spatiotemporal control over protein degradation, and to an extent are correlated with their photoisomeric state (cis/trans-configuration), showcasing an application of the photochemistry concept in precision medicine. This study compiles the photoswitchable PROTACs targeted to bromodomain proteins: BRD 2, 3, and 4; kinases (BCR-ABL fusion protein, ABL); and the immunophilin FKBP12. Photocaging of PROTACs found successes in selective light-controlled degradation of kinase proteins, bromodomain-containing proteins, and estrogen receptors in cancer cells.
Source: crossref · Quality: baseline
Research context
OpenAlex topics: Protein Degradation and Inhibitors · Ubiquitin and proteasome pathways · Photochromic and Fluorescence Chemistry
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
Department of Bioproduct and Biosystems, Aalto University, 02150 Espoo, Finland
Department of Applied Physics, School of Science, Aalto University, 02150 Espoo, Finland
CERMN (Centre d’Etudes et de Recherche sur le Médicament de Normandie), Normandie University UNICAEN, 14000 Caen, France
References (86)
Show source-provided references
1. The new frontier of genome engineering with CRISPR-Cas910.1126/science.1258096 ↗
2. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells10.1038/35078107 ↗
3. Acute and rapid degradation of endogenous proteins by Trim-Away10.1038/s41596-018-0028-3 ↗
4. Small-molecule hydrophobic tagging–induced degradation of HaloTag fusion proteins10.1038/nchembio.597 ↗
5. Induced protein degradation: An emerging drug discovery paradigm10.1038/nrd.2016.211 ↗
6. A method for the acute and rapid degradation of endogenous proteins10.1016/j.cell.2017.10.033 ↗
7. The advantages of targeted protein degradation over inhibition: An RTK case study10.1016/j.chembiol.2017.09.009 ↗
8. Pharmacological perturbation of CDK9 using selective CDK9 inhibition or degradation10.1038/nchembio.2538 ↗
9. Functional TRIM24 degrader via conjugation of ineffectual bromodomain and VHL ligands10.1038/s41589-018-0010-y ↗
10. A selective BCL-XL PROTAC degrader achieves safe and potent antitumor activity10.1038/s41591-019-0668-z ↗
11. Natural products as Mcl-1 inhibitors: A comparative study of experimental and computational modelling data10.3390/chemistry4030067 ↗
12. Proteolysis targeting chimeras for the selective degradation of Mcl-1/Bcl-2 derived from nonselective target binding ligands10.1021/acs.jmedchem.9b00919 ↗
13. Development of Mcl-1 inhibitors for cancer therapy10.1016/j.ejmech.2020.113038 ↗
14. Phthalimide conjugation as a strategy for in vivo target protein degradation10.1126/science.aab1433 ↗
15. Hijacking the E3 ubiquitin ligase cereblon to efficiently target BRD410.1016/j.chembiol.2015.05.009 ↗
16. Chemically induced degradation of anaplastic lymphoma kinase (ALK)10.1021/acs.jmedchem.7b01655 ↗
17. Catalytic in vivo protein knockdown by small-molecule PROTACs10.1038/nchembio.1858 ↗
18. Targeted degradation of aberrant tau in frontotemporal dementia patient-derived neuronal cell models10.7554/eLife.45457 ↗
19. Phase, I.A. (2019, May 29). Clinical Trial of ARV-110 in Patients With Metastatic Castration-resistant Prostate Cancer. Full Text View-Clinical Trials, Available online: https://clinicaltrials.gov/ct2/show/NCT03888612.
20. A roadmap to success in photopharmacology10.1021/acs.accounts.5b00129 ↗
21. Visible-to-NIR-light activated release: From small molecules to nanomaterials10.1021/acs.chemrev.0c00663 ↗
22. Insulin receptor isoforms and insulin receptor/insulin-like growth factor receptor hybrids in physiology and disease10.1210/er.2008-0047 ↗
23. Recent advancements in small molecule inhibitors of insulin–like growth factor-1 receptor (IGF-1R) tyrosine kinase as anticancer agents10.2174/1389557511313050004 ↗
24. Heparin-binding epidermal growth factor-like growth factor isoforms and epidermal growth factor receptor/ErbB1 expression in bladder cancer and their relation to clinical outcome
25. Co-existence of heparin-binding epidermal growth factor-like growth factor and pinopodes in human endometrium at the time of implantation10.1093/molehr/8.8.765 ↗
26. Photoremovable protecting groups in chemistry and biology: Reaction mechanisms and efficacy10.1021/cr300177k ↗
27. Photodynamic therapy and pain: A systematic review10.1016/j.pdpdt.2017.07.002 ↗
28. Structure-guided design and optimization of small molecules targeting the protein–protein interaction between the von Hippel–Lindau (VHL) E3 ubiquitin ligase and the hypoxia inducible factor (HIF) alpha subunit with in vitro nanomolar affinities10.1021/jm5011258 ↗
29. HIF-1α binding to VHL is regulated by stimulus-sensitive proline hydroxylation10.1073/pnas.181341498 ↗
30. Structure of an HIF-1α-pVHL complex: Hydroxyproline recognition in signaling10.1126/science.1073440 ↗
31. Structural basis for the recognition of hydroxyproline in HIF-1α by pVHL10.1038/nature00767 ↗
32. Selective small molecule induced degradation of the BET bromodomain protein BRD410.1021/acschembio.5b00216 ↗
33. The estrogen-related receptor alpha: The oldest, yet an energetic orphan with robust biological functions10.3109/10799893.2010.487493 ↗
34. Mechanism of photocleavage of (coumarin-4-yl) methyl esters10.1021/jp071521c ↗
35. Optical control of small molecule-induced protein degradation10.1021/jacs.9b12718 ↗
36. Development of highly potent and selective steroidal inhibitors and degraders of CDK810.1021/acsmedchemlett.8b00011 ↗
37. BET bromodomain proteins function as master transcription elongation factors independent of CDK9 recruitment10.1016/j.molcel.2017.06.004 ↗
38. A new photocaging group for aromatic N-heterocycles10.1055/s-2006-942424 ↗
39. Activation and deactivation of DNAzyme and antisense function with light for the photochemical regulation of gene expression in mammalian cells10.1021/ja100710j ↗
40. Optochemical control of biological processes in cells and animals10.1002/anie.201700171 ↗
41. Light-induced protein degradation with photocaged PROTACs10.1021/jacs.9b06422 ↗
42. Structure of the DDB1–CRBN E3 ubiquitin ligase in complex with thalidomide10.1038/nature13527 ↗
43. Selective inhibition of BET bromodomains10.1038/nature09504 ↗
44. Brd4 associates with mitotic chromosomes throughout early zebrafish embryogenesis
45. Targeting the C481S ibrutinib-resistance mutation in Bruton’s tyrosine kinase using PROTAC-mediated degradation10.1021/acs.biochem.8b00391 ↗
46. Optical control of targeted protein degradation10.1016/j.chembiol.2021.05.010 ↗
47. Azobenzene Photoswitches in Proteolysis Targeting Chimeras: Photochemical Control Strategies and Therapeutic Benefits10.1002/slct.202200981 ↗
48. Azo-PROTAC: Novel light-controlled small-molecule tool for protein knockdown10.1021/acs.jmedchem.9b02058 ↗
49. Reversible spatiotemporal control of induced protein degradation by bistable PhotoPROTACs10.1021/acscentsci.9b00713 ↗
50. PHOTACs enable optical control of protein degradation10.1126/sciadv.aay5064 ↗
51. Multi-targeting protein-protein interaction inhibitors: Evolution of macrocyclic ligands with embedded carbohydrates (MECs) to improve selectivity10.1016/j.ejmech.2019.04.064 ↗
52. Structure of the human Cereblon–DDB1–lenalidomide complex reveals basis for responsiveness to thalidomide analogs10.1038/nsmb.2874 ↗
53. The structure of Dasatinib (BMS-354825) bound to activated ABL kinase domain elucidates its inhibitory activity against imatinib-resistant ABL mutants10.1158/0008-5472.CAN-05-4187 ↗
54. 1, 2-Diarylbenzene as fast T-type photochromic switch10.1039/C8TC05357J ↗
55. Delineating the role of cooperativity in the design of potent PROTACs for BTK10.1073/pnas.1803662115 ↗
56. A comprehensive mathematical model for three-body binding equilibria10.1021/ja311795d ↗
57. Homolog-Selective Degradation as a Strategy to Probe the Function of CDK6 in AML10.1016/j.chembiol.2018.11.006 ↗
58. Long wavelength optical control of glutamate receptor ion channels using a tetra-ortho-substituted azobenzene derivative10.1039/C4CC06612J ↗
59. Photoswitchable inhibitors of microtubule dynamics optically control mitosis and cell death10.1016/j.cell.2015.06.049 ↗
60. Sign inversion in photopharmacology: Incorporation of cyclic azobenzenes in photoswitchable potassium channel blockers and openers10.1002/ange.201905790 ↗
61. Recent Developments in PROTAC-Mediated Protein Degradation: From Bench to Clinic10.1002/cbic.202100270 ↗
62. Lessons in PROTAC design from selective degradation with a promiscuous warhead10.1016/j.chembiol.2017.09.010 ↗
63. Differential PROTAC substrate specificity dictated by orientation of recruited E3 ligase10.1038/s41467-018-08027-7 ↗
64. Identification and characterization of Von Hippel-Lindau-recruiting proteolysis targeting chimeras (PROTACs) of TANK-binding kinase 110.1021/acs.jmedchem.7b00635 ↗
65. Discovery of a small-molecule degrader of bromodomain and extra-terminal (BET) proteins with picomolar cellular potencies and capable of achieving tumor regression10.1021/acs.jmedchem.6b01816 ↗
66. o-Fluoroazobenzenes as readily synthesized photoswitches offering nearly quantitative two-way isomerization with visible light10.1021/ja310323y ↗
67. ortho-Fluoroazobenzenes: Visible light switches with very long-lived z isomers10.1002/chem.201404649 ↗
68. Thermodynamically stable, photoreversible pharmacology in neurons with one-and two-photon excitation10.1002/ange.201807880 ↗
69. Photopharmacology: Beyond proof of principle10.1021/ja413063e ↗
70. The FKBP12-rapamycin-binding domain is required for FKBP12-rapamycin-associated protein kinase activity and G1 progression10.1074/jbc.274.7.4266 ↗
71. Computational characterization of structural dynamics underlying function in active membrane transporters10.1016/j.sbi.2015.04.001 ↗
72. Ligand-mediated active targeting for enhanced oral absorption10.1016/j.drudis.2014.03.001 ↗
73. Current prodrug strategies via membrane transporters/receptors10.1517/14712598.2.6.607 ↗
74. Negi, A., and Voisin-Chiret, A.S. (2022). Strategies to reduce the On-target Platelet Toxicity of Bcl-xL Inhibitors: PROTACs, SNIPERs and Prodrug-based approaches. ChemBioChem, e202100689.10.1002/cbic.202100689 ↗
75. Semiconducting polymer nano-PROTACs for activatable photo-immunometabolic cancer therapy10.1038/s41467-021-23194-w ↗
76. Negi, A., and Kesari, K.K. (2022). Chitosan Nanoparticle Encapsulation of Antibacterial Essential Oils. Micromachines, 13.10.3390/mi13081265 ↗
77. Light transport in tissue10.1364/AO.28.002216 ↗
78. Penetration depth of photons in biological tissues from hyperspectral imaging in shortwave infrared in transmission and reflection geometries10.1117/1.JBO.21.12.126006 ↗
79. Rationally designed azobenzene photoswitches for efficient two-photon neuronal excitation10.1038/s41467-019-08796-9 ↗
80. Photoswitching using visible light: A new class of organic photochromic molecules10.1021/ja503016b ↗
81. Heteroaryl azo dyes as molecular photoswitches10.1038/s41570-019-0074-6 ↗
82. Taking phototherapeutics from concept to clinical launch10.1038/s41570-021-00326-w ↗
83. Imine/amide–imidazole conjugates derived from 5-amino-4-cyano-N1-substituted benzyl imidazole: Microwave-assisted synthesis and anticancer activity via selective topoisomerase-II-α inhibition10.1016/j.bmc.2015.07.020 ↗
84. An improved method for synthesis of non-symmetric triarylpyridines10.1016/j.tet.2022.132930 ↗
85. Understanding the reactivity of polycyclic aromatic hydrocarbons and related compounds10.1039/D0SC00222D ↗
86. Ciprofloxacin–photoswitch conjugates: A facile strategy for photopharmacology10.1021/acs.bioconjchem.5b00591 ↗